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SCNpilot_cont_300_bf_scaffold_960_curated

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_960_curated_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..163
DNA (162bp) protein (54aa)
cytochrome B n=1 Tax=Sphingomonas melonis RepID=UPI0003622FB0
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
cytochrome b/b6 domain-containing protein
SCNpilot_cont_300_bf_scaffold_960_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

188..1030
DNA (843bp) protein (281aa)
cytochrome C n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037DCDCD
Cytochrome C {ECO:0000313|EMBL:AIT06485.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c1
SCNpilot_cont_300_bf_scaffold_960_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1258..1791
DNA (534bp) protein (178aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
adenine phosphoribosyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58715
adenine phosphoribosyltransferase
SCNpilot_cont_300_bf_scaffold_960_curated_4
unknown

Not on your lists

1876..2088
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_960_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2194..2382)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00038231B2
Uncharacterized protein {ECO:0000313|EMBL:AIT06483.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_960_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2618..3124
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00038231B2
Sphingomonas taxi strain 30a NODE_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28124.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_960_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3048..3320)
DNA (273bp) protein (91aa)
MaoC family dehydratase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC5D5
Acyl dehydratase {ECO:0000313|EMBL:AIT06482.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
MaoC-like dehydratase
SCNpilot_cont_300_bf_scaffold_960_curated_8
unknown

Not on your lists

3730..4734
DNA (1005bp) protein (335aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_960_curated_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4895..5995)
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=1 Tax=Sphingomonas sp. S17 RepID=F3X315_9SPHN
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
GTP-binding protein YchF
SCNpilot_cont_300_bf_scaffold_960_curated_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6075..7886)
DNA (1812bp) protein (604aa)
small-conductance mechanosensitive channel n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B71E5F
Uncharacterized protein {ECO:0000313|EMBL:AHE56866.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_960_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8002..8583)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036D7104
Sphingomonas taxi strain 30a NODE_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28438.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_960_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8586..9155)
DNA (570bp) protein (190aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase n=1 Tax=Sphingomonas sp. S17 RepID=F3X312_9SPHN
SCNpilot_cont_300_bf_scaffold_960_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9237..9860)
DNA (624bp) protein (208aa)
50S ribosomal protein L25 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375225E
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
50S ribosomal protein L25/general stress protein Ctc
SCNpilot_cont_300_bf_scaffold_960_curated_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10092..10988)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036A7649
Putative GumN-family protein {ECO:0000313|EMBL:GAM00185.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
GumN protein; K09973 hypothetical protein
SCNpilot_cont_300_bf_scaffold_960_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11076..11987
DNA (912bp) protein (304aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
glycyl-tRNA synthetase subunit alpha n=1 Tax=Sphingomonas elodea RepID=UPI0002630CD9
SCNpilot_cont_300_bf_scaffold_960_curated_16
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11984..14251
DNA (2268bp) protein (756aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
glyS; glycyl-tRNA ligase subunit beta (EC:6.1.1.14)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000361BA71
SCNpilot_cont_300_bf_scaffold_960_curated_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14325..16997
DNA (2673bp) protein (891aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Sphingomonas sp. S17 RepID=F3X231_9SPHN
PpdK protein {ECO:0000313|EMBL:GAN12175.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_960_curated_18
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17023..17592
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3E2
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_960_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17589..18119
DNA (531bp) protein (177aa)
Integral membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USV3_9SPHN
Integral membrane protein {ECO:0000313|EMBL:ENY81404.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
integral membrane protein
SCNpilot_cont_300_bf_scaffold_960_curated_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18225..19115)
DNA (891bp) protein (297aa)
prephenate dehydratase (EC:4.2.1.51)
prephenate dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B46024
Prephenate dehydratase family protein {ECO:0000313|EMBL:EZP52480.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_300_bf_scaffold_960_curated_21
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19223..19888
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037BE892
Cytochrome C {ECO:0000313|EMBL:KHA64236.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
cytochrome c; K08738 cytochrome c
SCNpilot_cont_300_bf_scaffold_960_curated_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20103..20975)
DNA (873bp) protein (291aa)
lysine decarboxylase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000366E49B
Lysine decarboxylase {ECO:0000313|EMBL:AIT06724.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_960_curated_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20986..21615)
DNA (630bp) protein (210aa)
extensin family protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B77BE7
Extensin {ECO:0000313|EMBL:KHA64238.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
extensin-like protein
SCNpilot_cont_300_bf_scaffold_960_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22782..22994
DNA (213bp) protein (71aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HQE3_9SPHN
SCNpilot_cont_300_bf_scaffold_960_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23099..24676
DNA (1578bp) protein (526aa)
serA; D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
3-phosphoglycerate dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00037A97B2
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26206.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_960_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24852..25946
DNA (1095bp) protein (365aa)
tRNA synthetase class II n=1 Tax=Sphingomonas melonis RepID=UPI0003740BBE
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26241.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hisZ; ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit
SCNpilot_cont_300_bf_scaffold_960_curated_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26068..27357
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
adenylosuccinate synthetase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B46613
adenylosuccinate synthetase
SCNpilot_cont_300_bf_scaffold_960_curated_28
unknown

Not on your lists

comp(27450..27743)
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Neospora caninum (strain Liverpool) RepID=F0VID4_NEOCL
SCNpilot_cont_300_bf_scaffold_960_curated_29
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28059..29126)
DNA (1068bp) protein (356aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
aroC; chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
chorismate synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5375
SCNpilot_cont_300_bf_scaffold_960_curated_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29123..29647)
DNA (525bp) protein (175aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI0003805824
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26210.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative acetyltransferase
Displaying items 1-30 of 51 in total

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