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SCNpilot_cont_300_bf_scaffold_3337_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3337_curated_1
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..412
DNA (411bp) protein (137aa)
cytochrome o ubiquinol oxidase subunit I (EC:1.10.3.-); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
UPI0003CFA60C related cluster n=1 Tax=unknown RepID=UPI0003CFA60C
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:ESZ86381.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
SCNpilot_cont_300_bf_scaffold_3337_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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416..1063
DNA (648bp) protein (216aa)
cyoC; cytochrome o ubiquinol oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Sphingomonas elodea RepID=UPI00026310C2
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:AIT07003.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_3337_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1060..1443
DNA (384bp) protein (128aa)
qoxD; quinol cytochrome oxidase polypeptide IV (EC:1.10.3.-); K02300 cytochrome o ubiquinol oxidase operon protein cyoD
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000369D6ED
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29654.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_3337_curated_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1440..2108
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B588CD
Surfeit locus 1 {ECO:0000313|EMBL:EZP51762.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Surfeit locus 1; K14998 surfeit locus 1 family protein
SCNpilot_cont_300_bf_scaffold_3337_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2078..3382
DNA (1305bp) protein (435aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
two-component sensor histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AF890
SCNpilot_cont_300_bf_scaffold_3337_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3379..3909
DNA (531bp) protein (177aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas melonis RepID=UPI000368A773
Chemotaxis protein CheY {ECO:0000313|EMBL:AIT06565.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Fis family two component transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3337_curated_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3998..5185)
DNA (1188bp) protein (396aa)
Acyl-CoA dehydrogenase, N-terminal domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZP3_9SPHN
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:GAM02651.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_3337_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5244..5588)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZW8_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ72041.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3337_curated_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5585..6532)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDE1_PHEZH
hypothetical protein; K06979
Uncharacterized protein {ECO:0000313|EMBL:ACG78331.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_3337_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6611..7981
DNA (1371bp) protein (457aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2I5_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY81727.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_cont_300_bf_scaffold_3337_curated_11
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8102..9097
DNA (996bp) protein (332aa)
hypothetical protein; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
Nitropropane dioxygenase/trans-enoyl-CoA reductase family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H2N2_CAUCN
Nitropropane dioxygenase/trans-enoyl-CoA reductase family protein {ECO:0000313|EMBL:KCZ83781.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
SCNpilot_cont_300_bf_scaffold_3337_curated_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9231..9680)
DNA (450bp) protein (150aa)
tRNA/rRNA methyltransferase SpoU; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
rRNA methyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B304CA
SCNpilot_cont_300_bf_scaffold_3337_curated_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9900..10484
DNA (585bp) protein (195aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ubiquinol-cytochrome C reductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B43FDC
ubiquinol-cytochrome c reductase iron-sulfur subunit
SCNpilot_cont_300_bf_scaffold_3337_curated_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10497..11150
DNA (654bp) protein (218aa)
cytochrome B n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037171C6
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome b/b6-like protein; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Displaying 14 items

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