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SCNpilot_cont_300_bf_scaffold_768_curated

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_768_curated_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

209..1675
DNA (1467bp) protein (489aa)
Polysaccharide biosynthesis protein n=1 Tax=uncultured organism RepID=T1W7A3_9ZZZZ
Capsule biosynthesis protein CapK {ECO:0000313|EMBL:AIT07563.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_768_curated_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1815..2747)
DNA (933bp) protein (311aa)
MarR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3H7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00438.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_768_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2888..4369)
DNA (1482bp) protein (494aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD synthetase n=1 Tax=Sphingomonas melonis RepID=UPI000363E521
SCNpilot_cont_300_bf_scaffold_768_curated_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4463..4762)
DNA (300bp) protein (100aa)
NAD(P) transhydrogenase subunit alpha (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369003F
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:EZP50924.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_300_bf_scaffold_768_curated_5
unknown

Not on your lists

comp(4766..5137)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_768_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5134..6255)
DNA (1122bp) protein (374aa)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Sphingomonas melonis RepID=UPI000366E612
Sphingomonas taxi strain 30a NODE_37, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26721.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NAD(P) transhydrogenase subunit alpha
SCNpilot_cont_300_bf_scaffold_768_curated_7
unknown

Not on your lists

comp(6261..6383)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_768_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6533..7609
DNA (1077bp) protein (359aa)
Fis family transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI00036FB985
Sphingomonas taxi strain 30a NODE_37, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26723.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Fis family two component sigma-54 specific transcriptional regulator
SCNpilot_cont_300_bf_scaffold_768_curated_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7585..7875
DNA (291bp) protein (97aa)
Fis family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD67B
Putative two-component response regulator {ECO:0000313|EMBL:GAM00432.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hydG; two-component system response regulator HydG
SCNpilot_cont_300_bf_scaffold_768_curated_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7912..8604)
DNA (693bp) protein (231aa)
HAD hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B717A9
Uncharacterized protein {ECO:0000313|EMBL:AHE53959.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hydrolase
SCNpilot_cont_300_bf_scaffold_768_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8611..9666)
DNA (1056bp) protein (352aa)
dihydropteroate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B66B55
Dihydropteroate synthase {ECO:0000313|EMBL:AIT07154.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
dihydropteroate synthase
SCNpilot_cont_300_bf_scaffold_768_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9784..10926)
DNA (1143bp) protein (381aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
modification methylase; K13581 modification methylase [EC:2.1.1.72]
modification methylase n=1 Tax=Sphingomonas melonis RepID=UPI000362299A
SCNpilot_cont_300_bf_scaffold_768_curated_13
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11168..11776)
DNA (609bp) protein (203aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
ribonuclease HII n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000372BAC5
ribonuclease H
SCNpilot_cont_300_bf_scaffold_768_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11764..12903)
DNA (1140bp) protein (380aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
phosphomethylpyrimidine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B38F65
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ENY79965.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_768_curated_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12909..13133)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026304FF
Uncharacterized protein {ECO:0000313|EMBL:GAO39018.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein; K09984 hypothetical protein
SCNpilot_cont_300_bf_scaffold_768_curated_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13232..14509
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037DB1A4
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABQ68474.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_768_curated_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14615..17107)
DNA (2493bp) protein (831aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA gyrase subunit B n=1 Tax=Sphingomonas melonis RepID=UPI00036841E7
gyrB; DNA gyrase subunit B
SCNpilot_cont_300_bf_scaffold_768_curated_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17159..18412)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B41126
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KEQ53197.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_768_curated_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18587..19645)
DNA (1059bp) protein (353aa)
DNA repair protein RecF n=1 Tax=Sphingomonas melonis RepID=UPI000360615F
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
recF; recombination protein F
SCNpilot_cont_300_bf_scaffold_768_curated_20
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19836..20639)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC97D
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:KHA63223.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_768_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20709..21971)
DNA (1263bp) protein (421aa)
sodium:dicarboxylate symporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EDD26E
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AJP70855.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative sodium/dicarboxylate symporter
SCNpilot_cont_300_bf_scaffold_768_curated_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22098..23450
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
phosphoglucosamine mutase n=1 Tax=Sphingomonas melonis RepID=UPI0003717F78
SCNpilot_cont_300_bf_scaffold_768_curated_23
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23437..24099
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002ED99AF
hypothetical protein; K08984 putative membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_768_curated_24
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24096..24392)
DNA (297bp) protein (99aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R2_NOVAD
TetR family transcriptional regulator {ECO:0000313|EMBL:KHS46704.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_768_curated_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24371..24679)
DNA (309bp) protein (103aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD481
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53873.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_768_curated_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24751..25923
DNA (1173bp) protein (391aa)
2Fe-2S ferredoxin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B42862
Rieske (2Fe-2S) protein
Rieske (2Fe-2S) protein {ECO:0000313|EMBL:ABD26112.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_768_curated_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26081..27691
DNA (1611bp) protein (537aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9332
Beta-carotene ketolase {ECO:0000313|EMBL:GAO53871.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD dependent oxidoreductase
SCNpilot_cont_300_bf_scaffold_768_curated_28
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27693..28355
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGB2_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:EAS49313.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_768_curated_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28331..29158)
DNA (828bp) protein (276aa)
amino acid permease n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B39950
phospholipid binding protein
Amino acid/polyamine/organocation transporter, APC superfamily {ECO:0000313|EMBL:ABD26114.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_768_curated_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29116..29553)
DNA (438bp) protein (146aa)
amino acid permease n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B39950
Amino acid permease {ECO:0000313|EMBL:GAO53870.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phospholipid binding protein
Displaying items 1-30 of 107 in total

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