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SCNpilot_cont_300_bf_scaffold_910_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_910_curated_1
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(72..1790)
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E3A2
SSS sodium solute transporter superfamily protein
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1787..2623)
DNA (837bp) protein (279aa)
Malyl-CoA lyase (EC:4.1.3.24)
CitryL-CoA lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV37_9GAMM
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_3
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2861..5035
DNA (2175bp) protein (725aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361C20C
putative TonB-dependent receptor
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_4
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5053..6009
DNA (957bp) protein (319aa)
ribokinase; K00852 ribokinase [EC:2.7.1.15]
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YBA2_9BURK
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_5
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6020..8164
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV42_9GAMM
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8172..9746
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV43_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03335.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_910_curated_7
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9933..11141
DNA (1209bp) protein (403aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CPG1_9BURK
putative acyl-CoA transferase
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_910_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11243..11494
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRK6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40988.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_910_curated_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11591..12535)
DNA (945bp) protein (315aa)
Carboxyphosphonoenolpyruvate phosphonomutase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II61_9SPHN
carboxyphosphonoenolpyruvate phosphonomutase
Carboxyphosphonoenolpyruvate phosphonomutase {ECO:0000313|EMBL:CCA91503.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_10
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12568..15405)
DNA (2838bp) protein (946aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II62_9SPHN
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:CCA91504.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15632..16738
DNA (1107bp) protein (369aa)
xylB; putative aryl-alcohol dehydrogenase; K00055 aryl-alcohol dehydrogenase [EC:1.1.1.90]
alcohol dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000367D5C9
Geraniol dehydrogenase {ECO:0000313|EMBL:AJT61649.1}; TaxID=382 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti).;"
SCNpilot_cont_300_bf_scaffold_910_curated_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16751..17500)
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II52_9SPHN
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCA91494.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_13
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17497..18438)
DNA (942bp) protein (314aa)
D-2-hydroxyacid dehydrogensase protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II53_9SPHN
D-2-hydroxyacid dehydrogenase
D-2-hydroxyacid dehydrogensase protein {ECO:0000313|EMBL:CCA91495.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_14
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18447..19208)
DNA (762bp) protein (254aa)
gluconate 5-dehydrogenase; K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
Gluconate 5-dehydrogenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II54_9SPHN
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:CCA91496.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19355..20410
DNA (1056bp) protein (352aa)
zinc-binding dehydrogenase; K00098 L-idonate 5-dehydrogenase [EC:1.1.1.264]
Zinc-binding dehydrogenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II55_9SPHN
Zinc-binding dehydrogenase {ECO:0000313|EMBL:CCA91497.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20407..20742
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003787799
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91498.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20788..21876
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00035C9439
gluconate utilization system LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor {ECO:0000313|EMBL:CCA91499.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_18
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21878..22759
DNA (882bp) protein (294aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:CCA91500.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CCA91500.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
2-hydroxy-3-oxopropionate reductase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II58_9SPHN
SCNpilot_cont_300_bf_scaffold_910_curated_19
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22761..23255
DNA (495bp) protein (165aa)
gluconokinase (EC:2.7.1.12); K00851 gluconokinase [EC:2.7.1.12]
Gluconokinase {ECO:0000313|EMBL:CCA91501.1}; EC=2.7.1.12 {ECO:0000313|EMBL:CCA91501.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Gluconokinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II59_9SPHN
SCNpilot_cont_300_bf_scaffold_910_curated_20
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23296..24642
DNA (1347bp) protein (449aa)
Major facilitator transporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II60_9SPHN
major facilitator superfamily transporter
Major facilitator transporter {ECO:0000313|EMBL:CCA91502.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_910_curated_21
unknown

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24658..25299
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_910_curated_22
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25277..25858)
DNA (582bp) protein (194aa)
YceI family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMI0_METSB
hypothetical protein
YceI family protein {ECO:0000313|EMBL:ACK52108.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_910_curated_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25871..26467)
DNA (597bp) protein (199aa)
Cytochrome B561 (Fragment) n=1 Tax=Caulobacter sp. AP07 RepID=J2Q3F4_9CAUL
Cytochrome B561 {ECO:0000313|EMBL:EJL34682.1}; Flags: Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
YceI family protein
SCNpilot_cont_300_bf_scaffold_910_curated_24
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26464..27084)
DNA (621bp) protein (207aa)
YceI family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMI2_METSB
hypothetical protein
YceI family protein {ECO:0000313|EMBL:ACK52110.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_910_curated_25
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27120..27728)
DNA (609bp) protein (203aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
azoR; FMN-dependent NADH-azoreductase; K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
FMN-dependent NADH-azoreductase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PQM3_9RHIZ
SCNpilot_cont_300_bf_scaffold_910_curated_26
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27837..28778
DNA (942bp) protein (314aa)
Putative DNA-binding transcriptional regulator n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2T1_9RHIZ
Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:CCM78940.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
LysR substrate-binding protein
SCNpilot_cont_300_bf_scaffold_910_curated_27
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28775..30019)
DNA (1245bp) protein (415aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ECB602
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:KGB53095.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_cont_300_bf_scaffold_910_curated_28
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30095..30637)
DNA (543bp) protein (181aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1S2_9SPHN
HTH-type transcriptional regulator {ECO:0000313|EMBL:KGB53094.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
putative transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_910_curated_29
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31107..33428
DNA (2322bp) protein (774aa)
transketolase, central region; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
transketolase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDE03
Transketolase {ECO:0000313|EMBL:KKC27123.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
Displaying 29 items

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