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SCNpilot_cont_300_bf_scaffold_630_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_630_curated_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(219..761)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4F269
Uncharacterized protein {ECO:0000313|EMBL:GAL99490.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_630_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

852..4352
DNA (3501bp) protein (1167aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
dnaE; DNA polymerase III alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Sphingomonas melonis RepID=UPI00036B7329
SCNpilot_cont_300_bf_scaffold_630_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4354..5013)
DNA (660bp) protein (220aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:BAK68560.1}; EC=5.2.1.8 {ECO:0000313|EMBL:BAK68560.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00038250F6
peptidyl-prolyl cis-trans isomerase
SCNpilot_cont_300_bf_scaffold_630_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5137..5544
DNA (408bp) protein (136aa)
Granule-associated 11 kDa protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBD2
Uncharacterized protein {ECO:0000313|EMBL:AIT05997.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_630_curated_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5559..6350)
DNA (792bp) protein (264aa)
alpha/beta hydrolase n=1 Tax=Afipia birgiae RepID=UPI00036035DA
Uncharacterized protein {ECO:0000313|EMBL:GAO39609.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
PGAP1 family protein
SCNpilot_cont_300_bf_scaffold_630_curated_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6375..6914)
DNA (540bp) protein (180aa)
acetyltransferase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA796
Putative acetyltransferase {ECO:0000313|EMBL:GAO39608.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
GCN5-like N-acetyltransferaser
SCNpilot_cont_300_bf_scaffold_630_curated_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6911..7927)
DNA (1017bp) protein (339aa)
poly-beta-hydroxybutyrate polymerase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PT13_9BRAD
Putative polyhydroxyalkanoate synthase {ECO:0000313|EMBL:GAO39607.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_630_curated_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7984..8331)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035EE68F
Uncharacterized protein {ECO:0000313|EMBL:GAO39606.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_630_curated_9
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8378..9823)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G9J7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96722.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_630_curated_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9820..13050)
DNA (3231bp) protein (1077aa)
multidrug transporter n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037CF527
Sphingomonas taxi strain 30a NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28999.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein
SCNpilot_cont_300_bf_scaffold_630_curated_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13054..14337)
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D32F6
Uncharacterized protein {ECO:0000313|EMBL:EQA96720.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
RND family efflux transporter MFP subunit
SCNpilot_cont_300_bf_scaffold_630_curated_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14385..15194)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003747D5B
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ACG79658.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_630_curated_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15338..17371
DNA (2034bp) protein (678aa)
membrane protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD73A
Surface antigen family protein {ECO:0000313|EMBL:EZP54786.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
surface antigen (D15); K07278 outer membrane protein
SCNpilot_cont_300_bf_scaffold_630_curated_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17371..21573
DNA (4203bp) protein (1401aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B47A1C
DNA, contig: SP648 {ECO:0000313|EMBL:GAN14953.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_630_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21642..23117
DNA (1476bp) protein (492aa)
cyclohexanone monooxygenase (EC:1.14.13.22)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375883F
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28707.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_630_curated_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23685..24998
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003617DD8
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28706.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
diguanylate cyclase/phosphodiesterase with extracellular sensor
SCNpilot_cont_300_bf_scaffold_630_curated_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25109..27403
DNA (2295bp) protein (765aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037346C1
Uncharacterized protein {ECO:0000313|EMBL:KHA65492.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
multi-sensor hybrid histidine kinase
SCNpilot_cont_300_bf_scaffold_630_curated_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27457..27843
DNA (387bp) protein (129aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
response regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3CB
Response regulator {ECO:0000313|EMBL:KHA65514.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_630_curated_19
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27954..28292
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPL9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS69504.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_630_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28412..29818
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381BC69
MATE efflux family protein {ECO:0000313|EMBL:ENY81683.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
SCNpilot_cont_300_bf_scaffold_630_curated_21
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29946..30236
DNA (291bp) protein (97aa)
10 kDa chaperonin n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SKE0_9SPHN
molecular chaperone GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_630_curated_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30282..31919
DNA (1638bp) protein (546aa)
60 kDa chaperonin n=2 Tax=Sphingobium yanoikuyae RepID=K9D7X2_SPHYA
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
groEL; chaperonin GroEL
SCNpilot_cont_300_bf_scaffold_630_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32110..33894
DNA (1785bp) protein (595aa)
elongation factor 3 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003602C44
Elongation factor 3 {ECO:0000313|EMBL:AIT06451.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ABC transporter-like protein
Displaying 23 items

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