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SCNpilot_expt_300_bf_scaffold_750_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_750_curated_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..409
DNA (408bp) protein (136aa)
heterodisulfide reductase subunit C (EC:1.8.98.1); K03390 heterodisulfide reductase subunit C [EC:1.8.98.1] id=12494660 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heterodisulfide reductase subunit C (EC:1.8.98.1); K03390 heterodisulfide reductase subunit C [EC:1.8.98.1]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_750_curated_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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420..1355
DNA (936bp) protein (312aa)
heterodisulfide reductase, B subunit (EC:1.8.98.1); K03389 heterodisulfide reductase subunit B [EC:1.8.98.1] id=12494661 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heterodisulfide reductase, B subunit (EC:1.8.98.1); K03389 heterodisulfide reductase subunit B [EC:1.8.98.1]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_750_curated_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1464..2369)
DNA (906bp) protein (302aa)
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] id=12494662 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ada; methylated-DNA-[protein]-cysteine S-methyltransferase (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_750_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2692..3000
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743809
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_750_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3185..5017
DNA (1833bp) protein (611aa)
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] id=12494664 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; tRNA (mnm(5)s(2)U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=2.1.1.61 {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; FAD-dependent cmnm(5)s(2)U34 oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=1.5.-.- {ECO:0000255|HAMAP-Rule:MF_01102};; TaxID=292415 species="Bacteria; Prot
SCNpilot_expt_300_bf_scaffold_750_curated_6
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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5395..6642
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003702682
Site-specific tyrosine recombinase XerC {ECO:0000313|EMBL:EXI84702.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
integrase family protein
SCNpilot_expt_300_bf_scaffold_750_curated_7
unknown

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6639..7013
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_750_curated_8
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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7118..7354
DNA (237bp) protein (79aa)
DNA-binding protein, excisionase family n=1 Tax=Methylomicrobium album BG8 RepID=H8GLQ4_METAL
Helix-turn-helix domain protein {ECO:0000313|EMBL:EXI84590.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_750_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7366..8205
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPP4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44983.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_300_bf_scaffold_750_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8202..9827
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKV2_POLNA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_300_bf_scaffold_750_curated_11
unknown

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10165..10497
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_750_curated_12
unknown

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10537..10785
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_750_curated_13
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10846..11925
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UK4_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD70549.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Displaying 13 items

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