ggKbase home page

SCNpilot_expt_300_bf_scaffold_345_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_345_curated_1
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..834)
DNA (834bp) protein (278aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=I6RM05_PSEAI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_300_bf_scaffold_345_curated_2
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(842..4288)
DNA (3447bp) protein (1149aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWA8_PSEUU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_300_bf_scaffold_345_curated_3
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4285..4965)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VWW9_9GAMM
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_expt_300_bf_scaffold_345_curated_4
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4962..6431)
DNA (1470bp) protein (490aa)
Putative uncharacterized protein (Fragment) id=1361660 bin=GWE1_T_denit_62_9 species=Ricinus communis genus=Ricinus taxon_order=Malpighiales taxon_class=unknown phylum=Streptophyta tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_expt_300_bf_scaffold_345_curated_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6413..7285)
DNA (873bp) protein (291aa)
Putative uncharacterized protein id=1361659 bin=GWE1_T_denit_62_9 species=Xanthomonas fuscans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_345_curated_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7781..8107)
DNA (327bp) protein (109aa)
putative dissimilatory sulfite reductase id=12498529 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative dissimilatory sulfite reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_345_curated_7
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8547..9251)
DNA (705bp) protein (235aa)
ompR1; Transcriptional regulatory protein ompR id=12498545 bin=THIO_MID species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Tax=GWE2_Gallionellales_58_10_curated
SCNpilot_expt_300_bf_scaffold_345_curated_8
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..10176)
DNA (828bp) protein (276aa)
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] id=12498546 bin=THIO_MID species=Methyloglobulus morosus genus=Methyloglobulus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
pstB; phosphate ABC transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Tax=CG_Rhodocyc_01
SCNpilot_expt_300_bf_scaffold_345_curated_9
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10229..11884)
DNA (1656bp) protein (552aa)
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein id=12498547 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_300_bf_scaffold_345_curated_10
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11896..14175)
DNA (2280bp) protein (760aa)
ABC transporter permease; K02037 phosphate transport system permease protein id=12498548 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC transporter permease; K02037 phosphate transport system permease protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_300_bf_scaffold_345_curated_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14309..14917)
DNA (609bp) protein (203aa)
signal peptide id=12498549 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal peptide
Tax=CG_Rhodocyc_01
SCNpilot_expt_300_bf_scaffold_345_curated_12
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14988..15971)
DNA (984bp) protein (328aa)
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein id=12498550 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_300_bf_scaffold_345_curated_13
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16396..18879)
DNA (2484bp) protein (828aa)
aioA; arsenite oxidase subunit AioA (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1] id=12498530 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
aoxB; arsenite oxidase large subunit (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Tax=CG_Hydro_01
SCNpilot_expt_300_bf_scaffold_345_curated_14
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18894..19415)
DNA (522bp) protein (174aa)
arsenite oxidase, small subunit (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1] id=12498531 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
aioB; arsenite oxidase subunit AioB (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1]
Tax=CG_Hydro_01
SCNpilot_expt_300_bf_scaffold_345_curated_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20086..20514
DNA (429bp) protein (143aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
protein tyrosine phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI0003619D35
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_345_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20533..21030
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003661420
Protein-tyrosine phosphatase, low molecular weight
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_345_curated_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21027..22106
DNA (1080bp) protein (360aa)
ACR3 family arsenite transporter; K03325 arsenite transporter, ACR3 family id=12498602 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ACR3 family arsenite transporter; K03325 arsenite transporter, ACR3 family
Putative arsenite transporter, ACR3 family {ECO:0000313|EMBL:AAZ97379.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_345_curated_18
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22116..23048
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003732749
beta-lactamase domain-containing protein
Tax=GWF2_Sideroxydans_59_14_curated
SCNpilot_expt_300_bf_scaffold_345_curated_19
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23048..24010
DNA (963bp) protein (321aa)
permease n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E24DE
Permease {ECO:0000313|EMBL:GAO35390.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
permease
SCNpilot_expt_300_bf_scaffold_345_curated_20
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24007..24321
DNA (315bp) protein (105aa)
hypothetical protein id=12498599 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:GAO35391.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_345_curated_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24334..25140
DNA (807bp) protein (269aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037055FB
arsM; arsenite S-adenosylmethyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AAZ97381.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_345_curated_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25152..25385
DNA (234bp) protein (78aa)
thiol-disulfide isomerase/thioredoxin id=12498597 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase/thioredoxin
Thiol-disulfide isomerase/thioredoxin {ECO:0000313|EMBL:AAZ97382.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_345_curated_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25412..25825
DNA (414bp) protein (138aa)
redox protein, regulator of disulfide bond formation id=12498540 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
redox protein, regulator of disulfide bond formation
Redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:BAN36890.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_300_bf_scaffold_345_curated_24
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26088..26855
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APM2_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36889.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_300_bf_scaffold_345_curated_25
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

Not on your lists

26859..27122
DNA (264bp) protein (88aa)
thiol-disulfide isomerase/thioredoxin id=12498542 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase/thioredoxin
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
SCNpilot_expt_300_bf_scaffold_345_curated_26
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27119..27730
DNA (612bp) protein (204aa)
Formylmethanofuran dehydrogenase subunit E n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE29_9PROT
formylmethanofuran dehydrogenase subunit E
Formylmethanofuran dehydrogenase subunit E {ECO:0000313|EMBL:BAN36888.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_300_bf_scaffold_345_curated_27
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27735..28019
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABM9_9PROT
hypothetical protein
Tax=CG_Hydro_01
SCNpilot_expt_300_bf_scaffold_345_curated_28
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28022..28918
DNA (897bp) protein (299aa)
Cation diffusion facilitator family transporter n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B984_9PROT
cation diffusion facilitator family transporter
Tax=CG_Hydro_01
SCNpilot_expt_300_bf_scaffold_345_curated_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28931..29650
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APK2_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36864.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_300_bf_scaffold_345_curated_30
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29716..30048
DNA (333bp) protein (111aa)
membrane protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037678CB
hypothetical protein; K09771 hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
Displaying items 1-30 of 46 in total

View Taxonomy