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SCNpilot_expt_300_bf_scaffold_1378_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1378_curated_1
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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396..3290
DNA (2895bp) protein (965aa)
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A id=12495545 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06412.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_expt_300_bf_scaffold_1378_curated_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3290..3637
DNA (348bp) protein (116aa)
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C id=12495546 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KIO48425.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
SCNpilot_expt_300_bf_scaffold_1378_curated_3
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3680..5299
DNA (1620bp) protein (540aa)
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D id=12495547 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06410.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_300_bf_scaffold_1378_curated_4
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5296..5784
DNA (489bp) protein (163aa)
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E id=12495548 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Potential Na+/H+ antiporter subunit {ECO:0000313|EMBL:CAI06409.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_300_bf_scaffold_1378_curated_5
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5781..6062
DNA (282bp) protein (94aa)
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F id=12495549 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Protein F of Na+/H+ antiporter of putative pH adaptation potassium efflux system {ECO:0000313|EMBL:CAI06408.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_300_bf_scaffold_1378_curated_6
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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6059..6370
DNA (312bp) protein (104aa)
phaG; monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G id=12495550 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaG; monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
Probable potassium efflux system protein {ECO:0000313|EMBL:CAI06407.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_300_bf_scaffold_1378_curated_7
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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6732..6899
DNA (168bp) protein (56aa)
RHS repeat-associated core domain-containing protein id=12495551 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RHS repeat-associated core domain-containing protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
SCNpilot_expt_300_bf_scaffold_1378_curated_8
Serpens flexibilis, Serpens, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6911..7198)
DNA (288bp) protein (96aa)
XRE family transcriptional regulator id=12495552 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
XRE family transcriptional regulator {ECO:0000313|EMBL:KHL68640.1}; TaxID=706570 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Serpens.;" source="Serpens flexibilis.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1378_curated_9
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7379..7663)
DNA (285bp) protein (95aa)
Transcriptional regulator with Fis-type helix-turn-helix motif id=12495553 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Transcriptional regulator with Fis-type helix-turn-helix motif
Transcriptional regulator with Fis-type helix-turn-helix motif {ECO:0000313|EMBL:AGK19289.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_expt_300_bf_scaffold_1378_curated_10
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7656..7970)
DNA (315bp) protein (105aa)
putative transcriptional regulator id=12495554 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGK18646.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_expt_300_bf_scaffold_1378_curated_11
unknown

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7974..8225
DNA (252bp) protein (84aa)
hypothetical protein, partial id=12495555 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_expt_300_bf_scaffold_1378_curated_12

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8252..8590
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374998E
Protein containing DUF891 {ECO:0000313|EMBL:EQD75093.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1378_curated_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8587..8874
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D6410
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96920.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_300_bf_scaffold_1378_curated_14
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9251..10150)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037151B8
Membrane protein {ECO:0000313|EMBL:EWY37468.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
conserved membrane protein of unknown function
SCNpilot_expt_300_bf_scaffold_1378_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10518..11666)
DNA (1149bp) protein (383aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit id=1324808 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 15 items

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