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SCNpilot_expt_1000_bf_scaffold_1140_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1140_curated_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..525)
DNA (525bp) protein (175aa)
Peptide chain release factor 3 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RF3_THIDA
prfC; peptide chain release factor 3; K02837 peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000255|HAMAP-Rule:MF_00072}; Short=RF-3 {ECO:0000255|HAMAP-Rule:MF_00072};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_2
unknown

Not on your lists

comp(975..1169)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1140_curated_3
unknown

Not on your lists

comp(1184..2020)
DNA (837bp) protein (279aa)
id=12497435 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_1140_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2212..2517
DNA (306bp) protein (102aa)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2720..3949)
DNA (1230bp) protein (410aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
aspartate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037C4E28
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4010..5308)
DNA (1299bp) protein (433aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01010}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
23S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003787200
SCNpilot_expt_1000_bf_scaffold_1140_curated_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5305..5982)
DNA (678bp) protein (226aa)
Putative uncharacterized protein id=1321121 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K07501 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6109..7398)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003648299
signal transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7504..8946
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037537DD
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8936..10588)
DNA (1653bp) protein (551aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
glucose-6-phosphate isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI000371D39C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10684..11169
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
peptidylprolyl isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003687DCF
FKBP-type peptidyl-prolyl cis-trans isomerase protein
SCNpilot_expt_1000_bf_scaffold_1140_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11220..11729)
DNA (510bp) protein (170aa)
sterol-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036800B5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96929.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_13
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11845..12261)
DNA (417bp) protein (139aa)
hypothetical protein; K07112 id=12497410 bin=THIO_MID species=Flavobacterium rivuli genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=THIO_MID organism_group=Betaproteobacteria
Transporter {ECO:0000313|EMBL:KGO81590.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein; K07112
SCNpilot_expt_1000_bf_scaffold_1140_curated_14
Deinococcus proteolyticus, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(12268..12840)
DNA (573bp) protein (191aa)
hypothetical protein; K07112 id=12497409 bin=THIO_MID species=Deinococcus aquatilis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K07112
Uncharacterized protein {ECO:0000313|EMBL:ADY25276.1}; TaxID=693977 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 /; NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12898..13581)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003775349
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96930.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13578..14525)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A3B9
ABC-type transport system periplasmic component
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14522..14890)
DNA (369bp) protein (123aa)
Putative uncharacterized protein id=1351335 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14956..15750)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003769227
ABC-type transport system permease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15836..16369
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645DD9
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16366..17310
DNA (945bp) protein (315aa)
TPR repeat-containing Zn-dependent protease id=12497403 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TPR repeat-containing Zn-dependent protease
Putative Zn-dependent protease containing TPR repeats {ECO:0000313|EMBL:AAZ96935.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17331..19523
DNA (2193bp) protein (731aa)
adenylyl cyclase class-3/4/guanylyl cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
Adenylyl cyclase class-3/4/guanylyl cyclase id=1351339 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19525..20292
DNA (768bp) protein (256aa)
cyclic-AMP phosphodiesterase id=12493389 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cyclic-AMP phosphodiesterase
cAMP phosphodiesterase class-II {ECO:0000313|EMBL:AAZ96937.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20370..20642
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE49_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36830.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1140_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20655..21680)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003759E4A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_25
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21786..23108)
DNA (1323bp) protein (441aa)
cytochrome C n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037EF08B
Flavocytochrome c sulfide dehydrogenase
Tax=RBG_16_Gamma2_65_34_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_26
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23105..23425)
DNA (321bp) protein (107aa)
Cytochrome c, class I n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G0J2_9GAMM
Cytochrome c, class I {ECO:0000313|EMBL:EHQ51329.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
cytochrome c class I
SCNpilot_expt_1000_bf_scaffold_1140_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23466..23993)
DNA (528bp) protein (176aa)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FE195
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24265..24993)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037553DD
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1140_curated_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25059..27608)
DNA (2550bp) protein (850aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-]
Multi-sensor Hybrid Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SK52_THIDA
Multi-sensor Hybrid Histidine Kinase {ECO:0000313|EMBL:AAZ96940.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1140_curated_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27619..28686)
DNA (1068bp) protein (356aa)
transport system ATPase; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
cell division protein FtsE n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D3891
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 31 in total

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