ggKbase home page

SCNpilot_expt_1000_bf_scaffold_938_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_938_curated_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_938_curated_2
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(659..997)
DNA (339bp) protein (113aa)
HicB id=4616362 bin=GWC2_Syntrophus__56_31 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
HicB family protein
Tax=CG_Rhodof_04
SCNpilot_expt_1000_bf_scaffold_938_curated_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(994..1257)
DNA (264bp) protein (88aa)
HicA protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036F0D72
HicA protein {ECO:0000313|EMBL:CDW94984.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
HicA protein
SCNpilot_expt_1000_bf_scaffold_938_curated_4
unknown

Not on your lists

1345..1728
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_938_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2070..2645
DNA (576bp) protein (192aa)
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA id=12496786 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2645..3211
DNA (567bp) protein (189aa)
electron transporter RnfB n=1 Tax=Thiobacillus thioparus RepID=UPI00035E8F3D
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB
Electron transport complex subunit B {ECO:0000255|HAMAP-Rule:MF_00463}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3208..4881
DNA (1674bp) protein (558aa)
electron transporter RnfC n=1 Tax=Thiobacillus denitrificans RepID=UPI00036006DA
electron transport complex protein RnfC; K03615 electron transport complex protein RnfC
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4885..5916
DNA (1032bp) protein (344aa)
electron transporter RnfG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037556D7
RnfABCDGE type electron transport complex subunit D; K03614 electron transport complex protein RnfD
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5913..6569
DNA (657bp) protein (219aa)
electron transporter RnfG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FA946
RnfABCDGE type electron transport complex subunit G; K03612 electron transport complex protein RnfG
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6566..7243
DNA (678bp) protein (226aa)
electron transporter RsxE n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DCE4D
electron transport complex RsxE subunit; K03613 electron transport complex protein RnfE
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_11
unknown

Not on your lists

7240..7392
DNA (153bp) protein (51aa)
Electron transport complex protein RnfE id=1329228 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_expt_1000_bf_scaffold_938_curated_12
unknown

Not on your lists

7389..8489
DNA (1101bp) protein (367aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_938_curated_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8432..9166
DNA (735bp) protein (245aa)
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
endonuclease IV n=1 Tax=Thiobacillus thioparus RepID=UPI00035F9333
SCNpilot_expt_1000_bf_scaffold_938_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9199..9849
DNA (651bp) protein (217aa)
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJY8_THIDA
S-adenosylmethionine-dependent methyltransferase
S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AAZ97008.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_15
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9904..10965)
DNA (1062bp) protein (354aa)
glycosyl transferase family 4; K02851 UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33]
Glycosyl transferase family 4 n=1 Tax=Thauera aminoaromatica S2 RepID=N6Z6G9_9RHOO
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_938_curated_16
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11165..12358)
DNA (1194bp) protein (398aa)
Putative glycosyltransferase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHA2_9GAMM
rfaG2; glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:CBL44194.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_expt_1000_bf_scaffold_938_curated_17
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..13440)
DNA (1086bp) protein (362aa)
mannosyltransferase (EC:2.4.1.-)
Mannosyltransferase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHA1_9GAMM
Glycosyl transferases group 1 family protein {ECO:0000313|EMBL:AJX15138.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
SCNpilot_expt_1000_bf_scaffold_938_curated_18
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13437..14540)
DNA (1104bp) protein (368aa)
glycosyltransferase; K00712 poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52]
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ7 RepID=UPI00036A6A73
Glycosyl transferase {ECO:0000313|EMBL:AHF99631.1}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii XH-48.;"
SCNpilot_expt_1000_bf_scaffold_938_curated_19
Thermocrinis albus, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(14537..15880)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SNN8_THEAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC88775.1}; TaxID=638303 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis.;" source="Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_20
unknown

Not on your lists

comp(15874..17094)
DNA (1221bp) protein (407aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_938_curated_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17174..17854)
DNA (681bp) protein (227aa)
hypothetical protein id=12497848 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_938_curated_22
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17956..19146)
DNA (1191bp) protein (397aa)
Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z35_RHOFD
lipopolysaccharide biosynthesis
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_938_curated_23
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19157..21466)
DNA (2310bp) protein (770aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000362AD0D
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:ACB32923.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_24
Prochlorococcus marinus, Prochlorococcus, Prochlorales, Cyanobacteria, Bacteria

Not on your lists

comp(21768..23321)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein n=1 Tax=Prochlorococcus marinus (strain MIT 9312) RepID=Q31AA2_PROM9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB50193.1}; TaxID=74546 species="Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.;" source="Prochlorococcus marinus (strain MIT 9312).;"
SCNpilot_expt_1000_bf_scaffold_938_curated_25
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23321..24031)
DNA (711bp) protein (237aa)
uppS; undecaprenyl pyrophosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INV0_BORPD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying 25 items

View Taxonomy