ggKbase home page

SCN18_14_9_16_R2_B_scaffold_183

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_183_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..692)
DNA (690bp) protein (230aa)
Putative AMP-dependent synthetase long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase) {ECO:0000313|EMBL:CCE09892.1}; EC=6.2.1.- {ECO:0000313|EMBL:CCE09892.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
acyl-CoA synthetase (EC:2.3.1.86)
Putative AMP-dependent synthetase long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTV4_9BRAD
SCN18_14_9_16_R2_B_scaffold_183_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

816..2033
DNA (1218bp) protein (406aa)
Putative leucine/isoleucine/valine-binding protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133F4_RHOPS
putative leucine/isoleucine/valine-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_3
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2049..2723)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037456AC
amino acid ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_4
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2711..3391)
DNA (681bp) protein (227aa)
Putative glutamine ABC transporter permease protein GlnM n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A766_9PROT
amino acid ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_5
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3525..4277)
DNA (753bp) protein (251aa)
ABC transporter n=1 Tax=Elioraea tepidiphila RepID=UPI000370DA3D
ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_6
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4258..5115)
DNA (858bp) protein (286aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRY3_9PROT
amino acid ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5200..5868
DNA (669bp) protein (223aa)
Hydantoin racemase (EC:5.1.99.-)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000312053F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_8
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5921..6547)
DNA (627bp) protein (209aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VZ69_9BRAD
flavin oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_9
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6559..7509)
DNA (951bp) protein (317aa)
N-carbamoyl-D-amino-acid hydrolase (EC:3.5.1.77)
Nitrilase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0GAA2_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_14_9_16_R2_B_scaffold_183_10
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7611..9080)
DNA (1470bp) protein (490aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EI64_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9088..10044)
DNA (957bp) protein (319aa)
Putative dihydrodipicolinate synthase n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0N1F2_BORBM
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:KGE00414.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
dihydrodipicolinate synthase
SCN18_14_9_16_R2_B_scaffold_183_12
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10048..11574)
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003796F91
amidohydrolase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11788..13011
DNA (1224bp) protein (408aa)
Transcriptional regulator, LysR family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9V7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE00965.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_183_14
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13030..14493
DNA (1464bp) protein (488aa)
Amidohydrolase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPM1_9PROT
Amidohydrolase {ECO:0000313|EMBL:EKE76497.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Amidohydrolase
SCN18_14_9_16_R2_B_scaffold_183_15
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14504..15052)
DNA (549bp) protein (183aa)
2'-5' RNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWI1_CAUSK
2'-5' RNA ligase
2'-5' RNA ligase {ECO:0000313|EMBL:ABZ71609.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_14_9_16_R2_B_scaffold_183_16
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15137..15931)
DNA (795bp) protein (265aa)
Putative hydratase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G4E2_9BRAD
putative hydratase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_17
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16024..18276)
DNA (2253bp) protein (751aa)
fadJ; fatty acid oxidation complex alpha subunit (EC:1.1.1.35 4.2.1.17 5.1.2.3)
Fatty acid oxidation complex alpha subunit n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITC2_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_18
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18386..19597)
DNA (1212bp) protein (404aa)
fadA; 3-ketoacyl-CoA thiolase (EC:2.3.1.16)
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:ACI99141.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ACI99141.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
3-ketoacyl-CoA thiolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITC3_RHOCS
SCN18_14_9_16_R2_B_scaffold_183_19
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19752..20891)
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E5491D
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFE55553.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
acyl-CoA dehydrogenase
SCN18_14_9_16_R2_B_scaffold_183_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21078..22277
DNA (1200bp) protein (400aa)
Family 3 adenylate cyclase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNI6_9RHIZ
Family 3 adenylate cyclase {ECO:0000313|EMBL:EIM25528.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
adenylate cyclase protein
SCN18_14_9_16_R2_B_scaffold_183_21
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22317..22748
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D365_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT81027.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCN18_14_9_16_R2_B_scaffold_183_22
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22745..23653)
DNA (909bp) protein (303aa)
Putative transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IJ97_AZOC5
lysR; transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAF86269.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_14_9_16_R2_B_scaffold_183_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23704..25065
DNA (1362bp) protein (454aa)
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase superfamily n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CAC8_ALCDB
Uncharacterized protein {ECO:0000313|EMBL:EYF06973.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase superfamily
SCN18_14_9_16_R2_B_scaffold_183_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25043..26557)
DNA (1515bp) protein (505aa)
3-hydroxy-acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JXN1_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_25
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26699..28606)
DNA (1908bp) protein (636aa)
Propionyl-CoA synthetase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKB1_AZOBR
prpE; propionyl-CoA synthetase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_26
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28665..29045)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7Q3_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV81751.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCN18_14_9_16_R2_B_scaffold_183_27
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29182..31020
DNA (1839bp) protein (613aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II (EC:2.3.1.86)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZTU8_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_28
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31091..32395
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) RepID=B8J0D7_DESDA
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R2_B_scaffold_183_29
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32496..32921
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036854CC
Putative ester cyclase {ECO:0000313|EMBL:EIV94857.1}; Flags: Precursor;; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_183_30
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33046..33222)
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4W8_MAGSA
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying items 1-30 of 118 in total

View Taxonomy