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SCN18_14_9_16_R2_B_scaffold_778

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_778_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1623)
DNA (1623bp) protein (541aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (Fragment) n=1 Tax=Sphingomonas sp. LH128 RepID=J8SJA8_9SPHN
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32314.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_778_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1769..3874)
DNA (2106bp) protein (702aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
Putative sensor histidine kinase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IXA6_9RHIZ
putative sensor histidine kinase
SCN18_14_9_16_R2_B_scaffold_778_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3912..4673
DNA (762bp) protein (254aa)
DNA-binding two-component response regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HUK7_9RHIZ
DNA-binding two-component response regulator {ECO:0000313|EMBL:EMG51342.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
DNA-binding two-component response regulator
SCN18_14_9_16_R2_B_scaffold_778_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4764..5720)
DNA (957bp) protein (319aa)
AraC family transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI0002892075
helix-turn-helix domain protein
AraC family transcriptional regulator {ECO:0000313|EMBL:EXL05208.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCN18_14_9_16_R2_B_scaffold_778_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5754..6719
DNA (966bp) protein (322aa)
Uncharacterized protein n=3 Tax=Ochrobactrum intermedium RepID=M5JLN6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT47548.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_778_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6725..8218
DNA (1494bp) protein (498aa)
L-carnitine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02129}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_02129};; Short=L-CDH {ECO:0000256|HAMAP-Rule:MF_02129};; EC=1.1.1.108 {ECO:0000256|HAMAP-Rule:MF_02129};; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
L-carnitine dehydrogenase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X327_OCHA4
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein
SCN18_14_9_16_R2_B_scaffold_778_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8302..8997
DNA (696bp) protein (232aa)
TetR family transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI0002899982
bacterial regulatory s, tetR family protein
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS15632.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_778_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8994..9938
DNA (945bp) protein (315aa)
hemolysin secretion protein D n=1 Tax=Ochrobactrum anthropi RepID=UPI000289EF58
efflux transporter, RND family, MFP subunit
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABS15633.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_778_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9945..10895
DNA (951bp) protein (317aa)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XBF5_9RHIZ
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERI12260.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
ABC transporter
SCN18_14_9_16_R2_B_scaffold_778_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10895..12034
DNA (1140bp) protein (380aa)
ABC-2 type transporter n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X331_OCHA4
ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:ABS15635.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_778_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12253..14172
DNA (1920bp) protein (640aa)
ABC transporter n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JLL2_9RHIZ
ABC transporter {ECO:0000313|EMBL:ELT47557.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
ABC transporter
SCN18_14_9_16_R2_B_scaffold_778_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14400..14954
DNA (555bp) protein (185aa)
Uncharacterized protein n=24 Tax=Brucella abortus RepID=U5C9W3_BRUAO
Uncharacterized protein {ECO:0000313|EMBL:EEH13623.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_778_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14951..15616
DNA (666bp) protein (222aa)
RES domain-containing protein n=3 Tax=Ochrobactrum intermedium RepID=C4WM89_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERM00695.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
RES domain-containing protein
SCN18_14_9_16_R2_B_scaffold_778_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16253..16474
DNA (222bp) protein (74aa)
Glutaredoxin-like protein NrdH n=3 Tax=Ochrobactrum intermedium RepID=C4WMB5_9RHIZ
Glutaredoxin-like protein NrdH {ECO:0000313|EMBL:ELT47582.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
nrdH; glutaredoxin-like protein NrdH
SCN18_14_9_16_R2_B_scaffold_778_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16492..16899
DNA (408bp) protein (136aa)
Protein NrdI n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KDW0_9RHIZ
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
nrdI; ribonucleotide reductase stimulatory protein
SCN18_14_9_16_R2_B_scaffold_778_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16875..19091
DNA (2217bp) protein (739aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X358_OCHA4
ribonucleotide-diphosphate reductase subunit alpha
SCN18_14_9_16_R2_B_scaffold_778_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19106..20095
DNA (990bp) protein (330aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=262698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus biovar 1 (strain 9-941).;"
Ribonucleoside-diphosphate reductase subunit beta n=193 Tax=Brucella RepID=A5VU43_BRUO2
SCN18_14_9_16_R2_B_scaffold_778_18
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20289..21290
DNA (1002bp) protein (334aa)
Putative transcriptional regulator protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UD57_9RHIZ
Putative transcriptional regulator protein {ECO:0000313|EMBL:ENN88098.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
periplasmic binding protein/LacI transcriptional regulator
SCN18_14_9_16_R2_B_scaffold_778_19
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21127..21918)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Geobacillus sp. WSUCF1 RepID=S7STR8_9BACI
Uncharacterized protein {ECO:0000313|EMBL:CDQ15368.1}; TaxID=576 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella sp.;"
SCN18_14_9_16_R2_B_scaffold_778_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22193..23002
DNA (810bp) protein (270aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Adenine deaminase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LY57_RHITR
adenine deaminase
SCN18_14_9_16_R2_B_scaffold_778_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23046..24398
DNA (1353bp) protein (451aa)
Putative permease yicO n=1 Tax=Enterobacter cloacae EcWSU1 RepID=G8LJQ7_ENTCL
Permease {ECO:0000313|EMBL:KGE06944.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
yicO; permease yicO
SCN18_14_9_16_R2_B_scaffold_778_22
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24425..25411)
DNA (987bp) protein (329aa)
rihB; pyrimidine-specific ribonucleoside hydrolase RihB (EC:3.2.2.8)
Pyrimidine-specific ribonucleoside hydrolase RihB {ECO:0000313|EMBL:AGO57225.1}; EC=3.2.2.8 {ECO:0000313|EMBL:AGO57225.1};; TaxID=682634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica 4Rx13.;"
Pyrimidine-specific ribonucleoside hydrolase RihB n=1 Tax=Serratia plymuthica 4Rx13 RepID=S0AN17_SERPL
SCN18_14_9_16_R2_B_scaffold_778_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25477..26850)
DNA (1374bp) protein (458aa)
Major facilitator transporter n=1 Tax=Serratia marcescens VGH107 RepID=M3AGE0_SERMA
major facilitator superfamily transporter
Major facilitator superfamily transporter {ECO:0000313|EMBL:AGE20220.1}; TaxID=435998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens WW4.;"
SCN18_14_9_16_R2_B_scaffold_778_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27027..27431)
DNA (405bp) protein (135aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CPK9_9BURK
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Uncharacterized protein {ECO:0000313|EMBL:AJE19766.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
SCN18_14_9_16_R2_B_scaffold_778_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27444..28385)
DNA (942bp) protein (314aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULP7_SINMW
periplasmic binding protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ABR64577.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 25 items

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