ggKbase home page

SCN18_13_7_16_R1_B_scaffold_202

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_202_1
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

188..1537
DNA (1350bp) protein (450aa)
glutamate dehydrogenase (EC:1.4.1.4)
glutamate dehydrogenase n=1 Tax=Gordonia kroppenstedtii RepID=UPI00037C2953
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
SCN18_13_7_16_R1_B_scaffold_202_2
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1647..2915
DNA (1269bp) protein (423aa)
PfkB domain protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SQN2_NOCSJ
ribokinase-like domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ABL84117.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCN18_13_7_16_R1_B_scaffold_202_3
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2912..3856
DNA (945bp) protein (315aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000255|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000255|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000255|HAMAP-Rule:MF_01876};; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=PSUG_NOCSJ
indigoidine synthase A family protein
SCN18_13_7_16_R1_B_scaffold_202_4
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4536..4775)
DNA (240bp) protein (80aa)
SCN18_13_7_16_R1_B_scaffold_202_5
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4983..5606
DNA (624bp) protein (208aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1385519 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia aerolata DSM 18566.;"
rnhA; ribonuclease HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TMD9_9MICO
SCN18_13_7_16_R1_B_scaffold_202_6
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5764..6966)
DNA (1203bp) protein (401aa)
Cystathionine gamma-synthase n=1 Tax=Nocardioides sp. CF8 RepID=R7XT44_9ACTO
Cystathionine gamma-synthase {ECO:0000313|EMBL:KGM10547.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
putative cystathionine gamma-synthase
SCN18_13_7_16_R1_B_scaffold_202_7
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7071..7571
DNA (501bp) protein (167aa)
AsnC family transcriptional regulator n=1 Tax=Nocardioides sp. CF8 RepID=R7XT05_9ACTO
AsnC family transcriptional regulator {ECO:0000313|EMBL:EYR63960.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
AsnC family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_202_8
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7699..8523)
DNA (825bp) protein (275aa)
ABC-type sugar transport system, permease component n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=A8ZR51_DEIGD
sugar ABC transporter permease
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:ABW34960.1}; TaxID=319795 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
SCN18_13_7_16_R1_B_scaffold_202_9
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8523..9479)
DNA (957bp) protein (319aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BIP0_MEISD
Uncharacterized protein {ECO:0000313|EMBL:ETK32861.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
extracellular solute-binding protein family 1
SCN18_13_7_16_R1_B_scaffold_202_10
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9505..10884)
DNA (1380bp) protein (460aa)
sugar binding protein n=1 Tax=Thermococcus zilligii RepID=UPI00029A0FCA
sugar transporter
Putative sugar transporter sugar binding lipoprotein {ECO:0000313|EMBL:ELQ91873.1}; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
SCN18_13_7_16_R1_B_scaffold_202_11
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11029..12102)
DNA (1074bp) protein (358aa)
sugar kinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5A472
Sugar kinase {ECO:0000313|EMBL:ELT45384.1}; TaxID=683150 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
ribokinase-like domain-containing protein
SCN18_13_7_16_R1_B_scaffold_202_12
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12127..13479
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI00034B1DF1
6-phospho-beta-glucosidase {ECO:0000313|EMBL:EFK99702.1}; TaxID=591157 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SPB78).;"
6-phospho-beta-glucosidase
SCN18_13_7_16_R1_B_scaffold_202_13
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13696..13986
DNA (291bp) protein (97aa)
DNA polymerase, beta-like region-containing protein n=3 Tax=Azotobacter vinelandii RepID=C1DLC0_AZOVD
DNA polymerase, beta-like region-containing protein
DNA polymerase, beta-like region-containing protein {ECO:0000313|EMBL:AGK22370.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCN18_13_7_16_R1_B_scaffold_202_14
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13983..14333
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037503C5
Uncharacterized protein {ECO:0000313|EMBL:KJK23789.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_202_15
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14457..14765)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00035E57C1
ethyl tert-butyl ether degradation EthD
Ethyl tert-butyl ether degradation EthD {ECO:0000313|EMBL:AEL24614.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCN18_13_7_16_R1_B_scaffold_202_16
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14869..15219
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B7B3A0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH93452.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
SCN18_13_7_16_R1_B_scaffold_202_17
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15216..15515
DNA (300bp) protein (100aa)
XRE family transcriptional regulator n=1 Tax=Saccharomonospora halophila RepID=UPI000379A5AC
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEH10478.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
SCN18_13_7_16_R1_B_scaffold_202_trna_3
unknown

Not on your lists

comp(15724..15796)
DNA (73bp)
transferRNA Arg
SCN18_13_7_16_R1_B_scaffold_202_trna_2
unknown

Not on your lists

comp(15838..15925)
DNA (88bp)
transferRNA Ser
SCN18_13_7_16_R1_B_scaffold_202_18
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16032..16703)
DNA (672bp) protein (224aa)
Transcriptional regulator, HxlR family n=1 Tax=Micromonospora sp. (strain L5) RepID=E8S8U7_MICSL
Putative HTH-type transcriptional regulator yybR {ECO:0000313|EMBL:KJF20297.1}; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
HxlR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_202_19
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16850..17995
DNA (1146bp) protein (382aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XKW0_9PSEU
type 12 methyltransferase
Tax=RBG_16_Chloroflexi_68_14_curated
SCN18_13_7_16_R1_B_scaffold_202_20
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18004..18501)
DNA (498bp) protein (166aa)
SCN18_13_7_16_R1_B_scaffold_202_21
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19035..21002)
DNA (1968bp) protein (656aa)
Acetoacetyl-CoA synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK51_NAKMY
acetoacetyl-CoA synthase
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ACV76734.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCN18_13_7_16_R1_B_scaffold_202_22
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21062..21799)
DNA (738bp) protein (246aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:KDA43020.1}; EC=3.1.1.45 {ECO:0000313|EMBL:KDA43020.1};; TaxID=683305 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
Carboxymethylenebutenolidase n=1 Tax=Frankia sp. (strain CcI3) RepID=Q2J9R6_FRASC
SCN18_13_7_16_R1_B_scaffold_202_23
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21928..23010
DNA (1083bp) protein (361aa)
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Putative phenylalanine aminotransferase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK50_NAKMY
histidinol-phosphate aminotransferase
SCN18_13_7_16_R1_B_scaffold_202_24
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23007..23759
DNA (753bp) protein (251aa)
membrane protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00036A192F
Uncharacterized protein {ECO:0000313|EMBL:GAD84761.1}; TaxID=1110697 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_202_25
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24046..24309
DNA (264bp) protein (88aa)
SCN18_13_7_16_R1_B_scaffold_202_26
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24698..25813)
DNA (1116bp) protein (372aa)
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
Alanine dehydrogenase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GYB3_CELFA
SCN18_13_7_16_R1_B_scaffold_202_trna_1
unknown

Not on your lists

comp(25998..26082)
DNA (85bp)
transferRNA Ser
SCN18_13_7_16_R1_B_scaffold_202_27
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26234..27235
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK40_NAKMY
zinc metallopeptidase
Uncharacterized protein {ECO:0000313|EMBL:ACV76723.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Displaying items 1-30 of 95 in total

View Taxonomy