ggKbase home page

SCN18_10_11_15_R4_P_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_252_1
scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, Eukaryote

Not on your lists

comp(56..604)
DNA (549bp) protein (183aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AA761
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_252_2
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(869..1303)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000371A90C
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:AEV97558.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_10_11_15_R4_P_scaffold_252_3
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1359..1952)
DNA (594bp) protein (198aa)
tRNA guanosine-2'-O-methyltransferase {ECO:0000313|EMBL:AEV97557.1}; EC=2.1.1.34 {ECO:0000313|EMBL:AEV97557.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA guanosine-2'-O-methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ40_NIAKG
tRNA guanosine-2'-O-methyltransferase
SCN18_10_11_15_R4_P_scaffold_252_4
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2074..2643)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZG0_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:GAO43229.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_252_5
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2725..3738)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378EBE5
Muconate cycloisomerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_6
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3754..6549)
DNA (2796bp) protein (932aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A593E
4-alpha-glucanotransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_7
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6709..8337
DNA (1629bp) protein (543aa)
Methylcrotonoyl-CoA carboxylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT7_NIAKG
methylcrotonoyl-CoA carboxylase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_8
Mucilaginibacter paludis_SCNPILOT_CONT_1000_P_Mucilaginibacter_44_25, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8391..9179
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372CD15
PhzF family phenazine biosynthesis protein
Tax=CG_Ignavi_01
SCN18_10_11_15_R4_P_scaffold_252_9
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9176..9661
DNA (486bp) protein (162aa)
RNaseH ribonuclease n=1 Tax=Segetibacter koreensis RepID=UPI000379F11E
RNase HI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_10
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9647..10873)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000361ED6F
mannose-6-phosphate isomerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10958..11314
DNA (357bp) protein (119aa)
UPF0102 protein NiasoDRAFT_2799 n=1 Tax=Niabella soli DSM 19437 RepID=H1NN85_9SPHI
hypothetical protein
UPF0102 protein NIASO_09615 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_10_11_15_R4_P_scaffold_252_12
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11317..13053
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036D1A77
X-Pro dipeptidyl-peptidase {ECO:0000313|EMBL:KIF33840.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_252_13
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13058..15307)
DNA (2250bp) protein (750aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037160FA
RNA binding S1 domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_14
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15860..16090
DNA (231bp) protein (77aa)
Helix-turn-helix domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L419_HALH1
Uncharacterized protein {ECO:0000313|EMBL:KIC93613.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
helix-turn-helix domain-containing protein
SCN18_10_11_15_R4_P_scaffold_252_15
SCNpilot_BF_INOC_Bacteroidetes_39_46, SCNpilot_BF_INOC_Bacteroidetes_39_46, SCNpilot_BF_INOC_Bacteroidetes_39_46, BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

Not on your lists

16087..16407
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00035D01DC
Uncharacterized protein {ECO:0000313|EMBL:KIC93612.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_252_16
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16404..17420
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JZ13_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC93557.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
HipA domain-containing protein
SCN18_10_11_15_R4_P_scaffold_252_17
unknown

Not on your lists

comp(17430..17726)
DNA (297bp) protein (99aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_252_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17886..19199)
DNA (1314bp) protein (438aa)
DNA polymerase III, epsilon subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TD85_NIAKG
DNA polymerase III subunit epsilon
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_19
unknown

Not on your lists

19403..19534
DNA (132bp) protein (44aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_252_20
unknown

Not on your lists

comp(19559..19987)
DNA (429bp) protein (143aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_252_21
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


20078..22693
DNA (2616bp) protein (872aa)
Valine--tRNA ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI83_CHIPD
valyl-tRNA synthetase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_22
scnpilot_dereplicated_Plasmid_Niastella_2, scnpilot_dereplicated_Plasmid_Niastella_2, scnpilot_dereplicated_Plasmid_Niastella_2, scnpilot_dereplicated_Plasmid_Niastella_2, scnpilot_dereplicated_Plasmid_Niastella_2, Plasmid-like

Not on your lists

22748..23335
DNA (588bp) protein (196aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ER76_EMTOG
phosphoesterase PA-phosphatase related protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCN18_10_11_15_R4_P_scaffold_252_23
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23344..23841
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037703A9
N-acetyltransferase GCN5
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_24
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23922..24419)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BC515
AsnC family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_25
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24539..25864
DNA (1326bp) protein (442aa)
Adenosylhomocysteinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIZ6_NIAKG
adenosylhomocysteinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_26
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25975..26928
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035E2880
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17375.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_10_11_15_R4_P_scaffold_252_27
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26918..27526
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003721F82
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ17472.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCN18_10_11_15_R4_P_scaffold_252_28
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27567..28400
DNA (834bp) protein (278aa)
Polysaccharide deacetylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRZ2_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF18000.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_10_11_15_R4_P_scaffold_252_29
SCNpilot_P_inoc_Niastella_39_19, SCNpilot_P_inoc_Niastella_39_19, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28609..30489
DNA (1881bp) protein (627aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003710448
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_252_30
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30561..31076
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQK0_9SPHI
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 71 in total

View Taxonomy