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SCN18_10_11_15_R4_P_scaffold_653

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_653_1
Synechococcus sp. PCC 7002, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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1..177
DNA (177bp) protein (59aa)
Transcriptional regulator, AraC family n=1 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XRM7_SYNP2
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACB01047.1}; TaxID=32049 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum; quadruplicatum).;"
SCN18_10_11_15_R4_P_scaffold_653_2
unknown

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438..881
DNA (444bp) protein (148aa)

This feature has no annotations

SCN18_10_11_15_R4_P_scaffold_653_3
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1007..1456)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3G5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO43021.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_653_4
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1468..4143)
DNA (2676bp) protein (892aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMX7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96639.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_10_11_15_R4_P_scaffold_653_5
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4230..5717)
DNA (1488bp) protein (496aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XWQ6_PEDHD
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACU04200.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCN18_10_11_15_R4_P_scaffold_653_6
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5766..7202)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3G1_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ29729.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCN18_10_11_15_R4_P_scaffold_653_7
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7252..10788)
DNA (3537bp) protein (1179aa)
TonB-dependent receptor plug n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3G0_9SPHI
TonB-dependent receptor plug {ECO:0000313|EMBL:EHQ29728.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
TonB-dependent receptor
SCN18_10_11_15_R4_P_scaffold_653_8
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11020..12228)
DNA (1209bp) protein (403aa)
anti-sigma factor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6A52D
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99801.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_10_11_15_R4_P_scaffold_653_9
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12320..12889)
DNA (570bp) protein (190aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9D0_9SPHI
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM37761.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
RNA polymerase sigma-70 factor
SCN18_10_11_15_R4_P_scaffold_653_10
SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16, Bacteroidetes, Bacteria

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comp(12965..14032)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00037D4D57
hypothetical protein
Tax=BJP_IG2102_Flavobacteriales_34_12
SCN18_10_11_15_R4_P_scaffold_653_11
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14358..15056
DNA (699bp) protein (233aa)
Possible ATP-dependent serine protease id=1825964 bin=GWE2_Bacteroidetes_42_42 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWF2_Bacteroidetes_43_63_curated
SCN18_10_11_15_R4_P_scaffold_653_12
SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, Bacteroidetes, Bacteria

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comp(15033..16541)
DNA (1509bp) protein (503aa)
Resolvase domain-containing protein id=4247566 bin=GWF2_Bacteroidetes_33_38 species=Flavobacteriaceae bacterium HQM9 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
resolvase domain-containing protein
Tax=GWF2_Bacteroidetes_33_38_curated
SCN18_10_11_15_R4_P_scaffold_653_13
unknown

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comp(16538..16732)
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 13 items

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