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SCN18_30_10_14_R3_B_scaffold_3461

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_3461_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19..324
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7C0_9BRAD
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpsN; 30S ribosomal protein S14
SCN18_30_10_14_R3_B_scaffold_3461_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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337..735
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Afipia birgiae RepID=UPI000300831D
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rpsH; 30S ribosomal protein S8
SCN18_30_10_14_R3_B_scaffold_3461_3
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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749..1282
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=2 Tax=Bradyrhizobiaceae RepID=F7QPY1_9BRAD
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rplF; 50S ribosomal protein L6
SCN18_30_10_14_R3_B_scaffold_3461_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1294..1656
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCM5_9BRAD
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplR; 50S ribosomal protein L18
SCN18_30_10_14_R3_B_scaffold_3461_5
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1706..2275
DNA (570bp) protein (190aa)
30S ribosomal protein S5 n=2 Tax=Oligotropha carboxidovorans RepID=RS5_OLICO
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_30_10_14_R3_B_scaffold_3461_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2303..2509
DNA (207bp) protein (69aa)
50S ribosomal protein L30 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PKN3_9BRAD
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rpmD; 50S ribosomal protein L30
SCN18_30_10_14_R3_B_scaffold_3461_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2521..3012
DNA (492bp) protein (164aa)
50S ribosomal protein L15 n=2 Tax=Oligotropha carboxidovorans RepID=RL15_OLICO
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_3461_8
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3134..4465
DNA (1332bp) protein (444aa)
Protein translocase subunit SecY n=2 Tax=Oligotropha carboxidovorans RepID=B6JEY5_OLICO
secY; preprotein translocase subunit SecY
Preprotein translocase subunit SecY {ECO:0000313|EMBL:AEI07010.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_3461_9
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4462..5481
DNA (1020bp) protein (340aa)
adk; adenylate kinase Adk (EC:2.7.4.3)
Adenylate kinase Adk {ECO:0000313|EMBL:AEI07009.1}; EC=2.7.4.3 {ECO:0000313|EMBL:AEI07009.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Adenylate kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JEY6_OLICO
SCN18_30_10_14_R3_B_scaffold_3461_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5639..6007
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=RS13_RHOPS
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_30_10_14_R3_B_scaffold_3461_11
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6116..6505
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJR6_AFIFE
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rpsK; 30S ribosomal protein S11
SCN18_30_10_14_R3_B_scaffold_3461_12
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6607..7611
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAC0_9BRAD
Displaying 12 items

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