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SCN18_30_10_14_R3_B_scaffold_1290

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1290_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..457)
DNA (456bp) protein (152aa)
F0F1 ATP synthase subunit A n=1 Tax=Afipia birgiae RepID=UPI0002F0D8B8
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
atpB; ATP synthase subunit a
SCN18_30_10_14_R3_B_scaffold_1290_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1302..1817
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3N7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34270.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1290_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1914..3575)
DNA (1662bp) protein (554aa)
major facilitator transporter n=1 Tax=Afipia birgiae RepID=UPI00037B42B6
Uncharacterized protein {ECO:0000313|EMBL:EKS34269.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
MFS family sugar transporter
SCN18_30_10_14_R3_B_scaffold_1290_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3877..4548
DNA (672bp) protein (224aa)
Putative glycerol metabolism activator AgmR n=2 Tax=Oligotropha carboxidovorans RepID=B6JDD3_OLICO
LuxR family two component transcriptional regulator
Putative glycerol metabolism activator AgmR {ECO:0000313|EMBL:AEI07923.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_30_10_14_R3_B_scaffold_1290_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4593..8111)
DNA (3519bp) protein (1173aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NN13_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29774.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
two-component hybrid sensor and regulator
SCN18_30_10_14_R3_B_scaffold_1290_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8300..8950
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU94_AFIFE
Transcriptional regulatory protein FixJ {ECO:0000313|EMBL:CEG09523.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
LuxR family transcriptional regulator
SCN18_30_10_14_R3_B_scaffold_1290_7
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8975..10246)
DNA (1272bp) protein (424aa)
hemA; 5-aminolevulinate synthase (EC:2.3.1.37)
5-aminolevulinate synthase HemA {ECO:0000313|EMBL:AEI07920.1}; EC=2.3.1.37 {ECO:0000313|EMBL:AEI07920.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
5-aminolevulinate synthase n=2 Tax=Oligotropha carboxidovorans RepID=B6JDD6_OLICO
SCN18_30_10_14_R3_B_scaffold_1290_8
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10375..11391)
DNA (1017bp) protein (339aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
bioB; biotin synthase (EC:2.8.1.6)
Biotin synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V716_9BRAD
SCN18_30_10_14_R3_B_scaffold_1290_trna_2
unknown

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comp(11425..11496)
DNA (72bp)
transferRNA Thr
SCN18_30_10_14_R3_B_scaffold_1290_9
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11783..11977
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V735_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51045.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCN18_30_10_14_R3_B_scaffold_1290_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12114..13403
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7A9_9BRAD
SCN18_30_10_14_R3_B_scaffold_1290_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13464..13916
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V738_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09498.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1290_12
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14032..15327
DNA (1296bp) protein (432aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Histidinol dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V739_9BRAD
hisD; histidinol dehydrogenase
SCN18_30_10_14_R3_B_scaffold_1290_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15324..15818
DNA (495bp) protein (165aa)
UPF0262 protein RPA4530 n=2 Tax=Rhodopseudomonas palustris RepID=Y4530_RHOPA
hypothetical protein
UPF0262 protein Rpal_5021 {ECO:0000255|HAMAP-Rule:MF_00678}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_30_10_14_R3_B_scaffold_1290_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15902..16366
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMP9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29689.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
protein-tyrosine-phosphatase
SCN18_30_10_14_R3_B_scaffold_1290_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16453..17076
DNA (624bp) protein (208aa)
Maf-like protein HMPREF9695_04158 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7A4_9BRAD
Maf-like protein HMPREF9695_04158 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
maf; Maf-like protein
SCN18_30_10_14_R3_B_scaffold_1290_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17178..17372
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DCC088
zinc-binding protein
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_30_10_14_R3_B_scaffold_1290_trna_1
unknown

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17511..17583
DNA (73bp)
transferRNA Phe
SCN18_30_10_14_R3_B_scaffold_1290_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17522..18676)
DNA (1155bp) protein (385aa)
Phage integrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRC6_NITHX
phage integrase
Phage integrase {ECO:0000313|EMBL:ABE61221.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_30_10_14_R3_B_scaffold_1290_18
CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, Eukaryote

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comp(18731..18973)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRC5_NITHX
Uncharacterized protein {ECO:0000313|EMBL:CEG09492.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_30_10_14_R3_B_scaffold_1290_19
unknown

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comp(19088..19333)
DNA (246bp) protein (82aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1290_20
unknown

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comp(19330..19584)
DNA (255bp) protein (85aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1290_21
unknown

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comp(19577..19897)
DNA (321bp) protein (107aa)

This feature has no annotations

SCN18_30_10_14_R3_B_scaffold_1290_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20259..21317)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XRE5_LEEBM
Uncharacterized protein {ECO:0000313|EMBL:EAQ47878.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
hypothetical protein
Displaying 24 items

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