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SCN18_26_2_15_R1_B_scaffold_4101

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_4101_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..742)
DNA (741bp) protein (247aa)
conjugal transfer protein TraI n=1 Tax=Hoeflea sp. 108 RepID=UPI0003749378
Conjugal transfer protein TraI {ECO:0000313|EMBL:KFL26564.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
conjugation TrbI family protein
SCN18_26_2_15_R1_B_scaffold_4101_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(739..1686)
DNA (948bp) protein (316aa)
P-type conjugative transfer protein TrbG n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X3X4_OCHA4
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KGJ12660.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
P-type conjugative transfer protein TrbG
SCN18_26_2_15_R1_B_scaffold_4101_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1646..2428)
DNA (783bp) protein (261aa)
Conjugal transfer protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID51_XANP2
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KHJ54596.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
conjugal transfer protein TrbF
SCN18_26_2_15_R1_B_scaffold_4101_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2425..3795)
DNA (1371bp) protein (457aa)
P-type conjugative transfer protein TrbL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX15_9RHIZ
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EYR84300.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein TrbL
SCN18_26_2_15_R1_B_scaffold_4101_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3798..4064)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000371AB71
Conjugal transfer protein TrbK {ECO:0000313|EMBL:KFL26568.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_4101_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4079..4567)
DNA (489bp) protein (163aa)
Conjugal transfer protein TrbJ n=1 Tax=uncultured bacterium RepID=C6KTK5_9BACT
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGJ12656.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
conjugal transfer protein TrbJ
SCN18_26_2_15_R1_B_scaffold_4101_7
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4936..5100)
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0P5Z9_RHIML
Uncharacterized protein {ECO:0000313|EMBL:GAJ29127.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_4101_8
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5249..5446
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5B5_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KGJ19649.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_4101_9
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5488..5742
DNA (255bp) protein (85aa)
Prevent-host-death family protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J178_POLGS
Prevent-host-death protein {ECO:0000313|EMBL:KGJ19648.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
Prevent-host-death family protein
SCN18_26_2_15_R1_B_scaffold_4101_10
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5849..6172
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY56_9RHIZ
Membrane protein {ECO:0000313|EMBL:KGD92871.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCN18_26_2_15_R1_B_scaffold_4101_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6162..6542
DNA (381bp) protein (127aa)
Transcriptional regulator helix turn helix domain n=10 Tax=Acetobacteraceae RepID=C7JFB5_ACEP3
DNA-binding protein {ECO:0000313|EMBL:KIZ41938.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator helix turn helix domain
SCN18_26_2_15_R1_B_scaffold_4101_12
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6555..7550
DNA (996bp) protein (332aa)
Resolvase domain protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YAN4_KETVW
Resolvase {ECO:0000313|EMBL:KGJ19646.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
Resolvase domain-containing protein
Displaying 12 items

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