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SCN18_30_10_14_R2_B_scaffold_2010

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2010_1
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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454..1236
DNA (783bp) protein (261aa)
RNA polymerase sigma70 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A95
FliA/WhiG family RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2010_2
SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, Gemmatimonadetes, Bacteria

Not on your lists

comp(1506..3407)
DNA (1902bp) protein (634aa)
acyl-CoA dehydrogenase n=1 Tax=Schlesneria paludicola RepID=UPI00029AA3F8
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AGA27665.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2010_3
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3404..5503)
DNA (2100bp) protein (700aa)
3-hydroxybutyryl-CoA epimerase (EC:5.1.2.3)
3-hydroxybutyryl-CoA epimerase n=1 Tax=Schlesneria paludicola RepID=UPI00029A0BC2
Multifunctional fatty acid oxidation complex subunit alpha {ECO:0000313|EMBL:EMI52195.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
SCN18_30_10_14_R2_B_scaffold_2010_4
Chlamydia sp. 'Rubis'_SCNPILOT_EXPT_500_P_Chlamydiales_33_8, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(5522..6832)
DNA (1311bp) protein (437aa)
3-ketoacyl-CoA thiolase (EC:2.3.1.16)
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:ADY60486.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ADY60486.1};; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
3-ketoacyl-CoA thiolase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SFM6_PLABD
SCN18_30_10_14_R2_B_scaffold_2010_5
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6875..7393)
DNA (519bp) protein (173aa)
Long-chain fatty-acid-CoA ligase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67K01_SYMTH
long-chain fatty-acid-CoA ligase
Long-chain fatty-acid-CoA ligase {ECO:0000313|EMBL:BAD41999.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
SCN18_30_10_14_R2_B_scaffold_2010_6

Not on your lists

comp(9342..9605)
DNA (264bp) protein (88aa)
Transposase, IS4 family n=1 Tax=Psychrobacter cryohalolentis (strain K5) RepID=Q1Q7T2_PSYCK
Transposase DDE domain protein {ECO:0000313|EMBL:AIA12275.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase, IS4
SCN18_30_10_14_R2_B_scaffold_2010_7
unknown

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comp(9814..10194)
DNA (381bp) protein (127aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_8
unknown

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comp(10191..10913)
DNA (723bp) protein (241aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_trna_2
unknown

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comp(11095..11167)
DNA (73bp)
transferRNA Glu
SCN18_30_10_14_R2_B_scaffold_2010_9
SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11250..15053)
DNA (3804bp) protein (1268aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54BF
SCN18_30_10_14_R2_B_scaffold_2010_10
unknown

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comp(15728..16450)
DNA (723bp) protein (241aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_11
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16901..17875
DNA (975bp) protein (325aa)
chitin deacetylase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54BD
polysaccharide deactylase family protein, PEP-CTERM locus subfamily
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily {ECO:0000313|EMBL:AGA29597.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2010_12
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17948..19657)
DNA (1710bp) protein (570aa)
DNA repair protein RecN n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D91
DNA repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2010_13
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19714..20484)
DNA (771bp) protein (257aa)
oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C474A
Uncharacterized protein {ECO:0000313|EMBL:CDM66186.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short chain dehydrogenase/reductase family oxidoreductase
SCN18_30_10_14_R2_B_scaffold_2010_14
unknown

Not on your lists

21072..23339
DNA (2268bp) protein (756aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F62
SCN18_30_10_14_R2_B_scaffold_2010_15
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23346..24650)
DNA (1305bp) protein (435aa)
Formylmethanofuran dehydrogenase subunit C n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F5F
formylmethanofuran dehydrogenase subunit C
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCN18_30_10_14_R2_B_scaffold_2010_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24647..25552)
DNA (906bp) protein (302aa)
formylmethanofuran--tetrahydromethanopterin formyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F5E
Formyltransferase/hydrolase complex subunit D {ECO:0000313|EMBL:AAX93729.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
formylmethanofuran--tetrahydromethanopterin N-formyltransferase
SCN18_30_10_14_R2_B_scaffold_2010_17
unknown

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comp(25658..26227)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E66679
SCN18_30_10_14_R2_B_scaffold_2010_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26333..27631)
DNA (1299bp) protein (433aa)
enolase (EC:4.2.1.11)
enolase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C40A2
Tax=GWB2_Clostridiales_37_7_curated
SCN18_30_10_14_R2_B_scaffold_2010_19
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(27940..28827)
DNA (888bp) protein (296aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
endonuclease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C40A0
apurinic endonuclease APN1
SCN18_30_10_14_R2_B_scaffold_2010_trna_1
unknown

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28973..29044
DNA (72bp)
transferRNA Thr
SCN18_30_10_14_R2_B_scaffold_2010_20
unknown

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comp(29136..29741)
DNA (606bp) protein (202aa)
excisionase family DNA-binding
SCN18_30_10_14_R2_B_scaffold_2010_21
unknown

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29833..30240
DNA (408bp) protein (136aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_22
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30287..30577)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030D3C9B
Transcriptional regulator XRE family {ECO:0000313|EMBL:AHZ45655.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
helix-turn-helix domain-containing protein
SCN18_30_10_14_R2_B_scaffold_2010_23
unknown

Not on your lists

30636..31385
DNA (750bp) protein (250aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_24
unknown

Not on your lists

comp(31391..31645)
DNA (255bp) protein (85aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_25
SCNPILOT_EXPT_750_P_Phage_59_12, SCNPILOT_EXPT_750_P_Phage_59_12, SCNPILOT_EXPT_750_P_Phage_59_12, SCNPILOT_EXPT_750_P_Phage_59_12, SCNPILOT_EXPT_750_P_Phage_59_12, Phage

Not on your lists

comp(31675..33888)
DNA (2214bp) protein (738aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4BBC
Marine sediment metagenome DNA, contig: S01H1_S03621 {ECO:0000313|EMBL:GAF93987.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Phage tail tape measure protein, lambda family
SCN18_30_10_14_R2_B_scaffold_2010_26
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34104..34742)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KW63_STEMA
Uncharacterized protein {ECO:0000313|EMBL:KDN87884.1}; TaxID=1348663 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2010_27
unknown

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comp(34888..35352)
DNA (465bp) protein (155aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2010_28
unknown

Not on your lists

comp(35427..35747)
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying 30 items

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