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SCN18_30_10_14_R2_B_scaffold_1377

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1377_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2..1048
DNA (1047bp) protein (349aa)
SCN18_30_10_14_R2_B_scaffold_1377_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1115..1996)
DNA (882bp) protein (294aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4569
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_1377_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2288..2671
DNA (384bp) protein (128aa)
cobalamin biosynthesis protein CbiX n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3FF4
Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:EDL58513.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
cobalamin (vitamin B12) biosynthesis CbiX protein
SCN18_30_10_14_R2_B_scaffold_1377_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2776..5091)
DNA (2316bp) protein (772aa)
serine/threonine protein kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C49CC
serine/threonine protein kinase-related protein
Serine/threonine protein kinase-related protein {ECO:0000313|EMBL:ADG66831.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1377_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5192..5803)
DNA (612bp) protein (204aa)
sigma factor n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C49CB
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADG66830.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1377_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6013..6486
DNA (474bp) protein (158aa)
glyoxalase family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3E55
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHC27256.1}; TaxID=700508 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum VKM Ac-1815D.;"
SCN18_30_10_14_R2_B_scaffold_1377_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6574..7047)
DNA (474bp) protein (158aa)
peptidase n=1 Tax=Ponticaulis koreensis RepID=UPI0003B3A925
peptidase domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCN18_30_10_14_R2_B_scaffold_1377_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7162..9177)
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F83CBD
Uncharacterized protein {ECO:0000313|EMBL:EYF05908.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
SCN18_30_10_14_R2_B_scaffold_1377_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9427..10845
DNA (1419bp) protein (473aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXW9_METNO
peptidase S8/S53 subtilisin kexin sedolisin
Pwb5 {ECO:0000313|EMBL:AHB86039.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCN18_30_10_14_R2_B_scaffold_1377_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10920..11156
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RMH9_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG03814.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCN18_30_10_14_R2_B_scaffold_1377_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11178..12941)
DNA (1764bp) protein (588aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
glycine-tRNA synthetase subunit beta n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C84
glycyl-tRNA synthetase
SCN18_30_10_14_R2_B_scaffold_1377_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13145..13603)
DNA (459bp) protein (153aa)
SCN18_30_10_14_R2_B_scaffold_1377_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13683..14504)
DNA (822bp) protein (274aa)
putative alkaline protease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C51D0
SCN18_30_10_14_R2_B_scaffold_1377_14
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14789..16459
DNA (1671bp) protein (557aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5999
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG67888.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1377_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16564..16959)
DNA (396bp) protein (132aa)
protein tyrosine phosphatase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C51E5
protein-tyrosine phosphatase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCN18_30_10_14_R2_B_scaffold_1377_16
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16987..17442)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3607
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC84046.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
SCN18_30_10_14_R2_B_scaffold_1377_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17439..18116)
DNA (678bp) protein (226aa)
MIP family channel protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ24_9BACT
major intrinsic protein
Tax=RBG_16_Nitrospirae_64_22_curated
SCN18_30_10_14_R2_B_scaffold_1377_18
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18113..18520)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E4BC67
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGG81903.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
Transcriptional repressor smtB
SCN18_30_10_14_R2_B_scaffold_1377_19
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18689..19129
DNA (441bp) protein (147aa)
heat shock protein, HSP20 family n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3AEC
hsp20; heat shock protein 20
Heat shock protein, HSP20 {ECO:0000313|EMBL:EKJ99757.1}; TaxID=993517 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica SH28.;"
SCN18_30_10_14_R2_B_scaffold_1377_20
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19247..19633
DNA (387bp) protein (129aa)
heat shock protein SP21 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3AED
Heat shock protein Hsp20 {ECO:0000313|EMBL:EMI17284.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
heat shock protein Hsp20
SCN18_30_10_14_R2_B_scaffold_1377_21
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19740..20822
DNA (1083bp) protein (361aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
chorismate synthase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C47BE
Displaying 21 items

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