ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1911

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1911_1
SCNpilot_P_inoc_Niastella_39_19, SCNpilot_P_inoc_Niastella_39_19, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

447..2402
DNA (1956bp) protein (652aa)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C591A
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein {ECO:0000313|EMBL:ADB15490.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_1911_2
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2485..3534
DNA (1050bp) protein (350aa)
2-oxoacid:acceptor oxidoreductase subunit beta (EC:1.2.7.3)
2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:AEP13328.1}; EC=1.2.7.3 {ECO:0000313|EMBL:AEP13328.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
2-oxoacid ferredoxin oxidoreductase subunit beta n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5919
SCN18_30_10_14_R2_B_scaffold_1911_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3616..4131
DNA (516bp) protein (172aa)
CBS domain containing protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C56A2
hypothetical protein
Tax=CSP1_4_Chloroflexi
SCN18_30_10_14_R2_B_scaffold_1911_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4583..5608
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000308F234
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG68925.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1911_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6456..7427
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000308F234
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG68297.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1911_6
unknown

Not on your lists

7441..7623
DNA (183bp) protein (61aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1911_7
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

7870..8208
DNA (339bp) protein (113aa)
cupin n=1 Tax=Hymenobacter aerophilus RepID=UPI000368CE1F
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:AFY44718.1}; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
SCN18_30_10_14_R2_B_scaffold_1911_8
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8221..9102)
DNA (882bp) protein (294aa)
Actin cytoskeleton-regulatory complex protein PAN1 n=3 Tax=Magnaporthe oryzae RepID=PAN1_MAGO7
Uncharacterized protein {ECO:0000313|EMBL:EOD41115.1, ECO:0000313|EnsemblProtists:EOD41115}; TaxID=280463 species="Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania.;" source="Emiliania huxleyi CCMP1516.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1911_9
unknown

Not on your lists

comp(9171..10040)
DNA (870bp) protein (290aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1911_10
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10158..11009
DNA (852bp) protein (284aa)
isomerase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C48C4
xylose isomerase domain-containing protein TIM barrel
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
SCN18_30_10_14_R2_B_scaffold_1911_11
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

comp(11126..13720)
DNA (2595bp) protein (865aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C54AB
ATPase
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_30_10_14_R2_B_scaffold_1911_12
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14026..15651
DNA (1626bp) protein (542aa)
ABC-2 type transporter n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C49AD
ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:ADG69925.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
Displaying 12 items

View Taxonomy