ggKbase home page

SCN18_30_10_14_R2_B_scaffold_3127

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3127_1
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(32..343)
DNA (312bp) protein (104aa)
two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C506D
Marine sediment metagenome DNA, contig: S01H1_S39309 {ECO:0000313|EMBL:GAG45443.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cusR; transcriptional regulatory protein CusR
SCN18_30_10_14_R2_B_scaffold_3127_2
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

comp(417..1529)
DNA (1113bp) protein (371aa)
Alpha/beta hydrolase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3U6_9PLAN
peptidase S9 prolyl oligopeptidase active site domain protein
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_3127_3
unknown

Not on your lists

comp(1839..1964)
DNA (126bp) protein (42aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3127_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2245..2841
DNA (597bp) protein (199aa)
RNA polymerase subunit sigma-70 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C63
RNA polymerase sigma-E type, Rhodopirellula baltica {ECO:0000313|EMBL:EMI55351.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
RNA polymerase sigma-E factor
SCN18_30_10_14_R2_B_scaffold_3127_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2810..5026
DNA (2217bp) protein (739aa)
probable serine/threonine protein kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C62
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ADB18112.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_3127_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5245..6567
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D771EE
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADG66406.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_3127_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6564..9710
DNA (3147bp) protein (1049aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030D666B
Acriflavin resistance protein {ECO:0000313|EMBL:ADG66407.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
acriflavin resistance protein
Displaying 7 items

View Taxonomy