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SCN18_30_10_14_R2_B_scaffold_3398

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3398_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2..763)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXS8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21076.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCN18_30_10_14_R2_B_scaffold_3398_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(797..1447)
DNA (651bp) protein (217aa)
prohead protease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3C8B
Marine sediment metagenome DNA, contig: S01H1_L03343 {ECO:0000313|EMBL:GAF69242.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase
SCN18_30_10_14_R2_B_scaffold_3398_3
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

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comp(1451..3061)
DNA (1611bp) protein (537aa)
Phage portal protein, HK97 family n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SZD8_PLAL2
phage portal protein, HK97 family
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCN18_30_10_14_R2_B_scaffold_3398_4
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

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comp(3082..3639)
DNA (558bp) protein (186aa)
Putative phage terminase large subunit n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IDG1_9FIRM
phage terminase-like protein, large subunit
Putative phage terminase large subunit {ECO:0000313|EMBL:CDB43421.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
SCN18_30_10_14_R2_B_scaffold_3398_5
unknown

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comp(3633..4013)
DNA (381bp) protein (127aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_6
unknown

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comp(4072..4329)
DNA (258bp) protein (86aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_7
unknown

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4460..5122
DNA (663bp) protein (221aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_8
unknown

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comp(5269..5499)
DNA (231bp) protein (77aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5785..6519)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036A2BCA
LuxR family transcriptional regulator
Tax=RBG_16_Gammaproteobacteria_66_13_curated
SCN18_30_10_14_R2_B_scaffold_3398_10
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6845..8038)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU10_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM90642.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_30_10_14_R2_B_scaffold_3398_11
unknown

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comp(8164..9201)
DNA (1038bp) protein (346aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_12
unknown

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comp(9167..10168)
DNA (1002bp) protein (334aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3398_13
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(10353..10811)
DNA (459bp) protein (153aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N3P1_SLAHD
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:ACV21632.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
SCN18_30_10_14_R2_B_scaffold_3398_14
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10934..12250)
DNA (1317bp) protein (439aa)
hypothetical protein, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38E1
Uncharacterized protein {ECO:0000313|EMBL:KKL12132.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
site-specific recombinase XerD
SCN18_30_10_14_R2_B_scaffold_3398_trna_1
unknown

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comp(12402..12474)
DNA (73bp)
transferRNA Ala
SCN18_30_10_14_R2_B_scaffold_3398_15
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(12543..13289)
DNA (747bp) protein (249aa)
phosphoesterase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C00
metallophosphoesterase
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_3398_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13524..14810)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5309
Uncharacterized protein {ECO:0000313|EMBL:EDL60886.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3398_17
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14926..15765)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C530A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27208.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 18 items

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