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SCN18_30_10_14_R2_B_scaffold_3650

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3650_1
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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226..1266
DNA (1041bp) protein (347aa)
GTP-binding protein YchF n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3Q6_ISOPI
GTPase
Putative GTPase, probable translation factor {ECO:0000313|EMBL:AGA30012.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3650_2
unknown

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comp(1498..1701)
DNA (204bp) protein (68aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3650_3
unknown

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1854..2582
DNA (729bp) protein (243aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3650_4
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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2579..4795
DNA (2217bp) protein (739aa)
Putative uncharacterized protein n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QHM0_DESB2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK85063.1}; TaxID=644282 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 /; 2st14).;"
SCN18_30_10_14_R2_B_scaffold_3650_5
SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4960..5367
DNA (408bp) protein (136aa)
DNA methylase, putative n=1 Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KBQ5_CHLTE
Uncharacterized protein {ECO:0000313|EMBL:GAO39239.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
DNA methylase
SCN18_30_10_14_R2_B_scaffold_3650_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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5734..6453
DNA (720bp) protein (240aa)
WD-40 repeat n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5912
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sigma-70 family RNA polymerase sigma factor
SCN18_30_10_14_R2_B_scaffold_3650_7
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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6426..8354
DNA (1929bp) protein (643aa)
WD-40 repeat n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5912
G-protein beta WD-40 repeats containing protein, putative {ECO:0000313|EMBL:EFO80624.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
SCN18_30_10_14_R2_B_scaffold_3650_8
SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, Gemmatimonadetes, Bacteria

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8750..9727
DNA (978bp) protein (326aa)
transposase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3BB0
ISXoo2 transposase {ECO:0000313|EMBL:EQD49234.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tnp37; transposase
SCN18_30_10_14_R2_B_scaffold_3650_9
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9849..11288
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5422
Calx-beta domain-containing protein
Calx-beta domain-containing protein {ECO:0000313|EMBL:AGA29745.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3650_10
unknown

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comp(11456..11791)
DNA (336bp) protein (112aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3650_11
unknown

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comp(11800..12264)
DNA (465bp) protein (155aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3650_12
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12261..13766)
DNA (1506bp) protein (502aa)
Protein containing planctomycete cytochrome C domain protein n=1 Tax=Rhodopirellula baltica SWK14 RepID=L7CLM7_RHOBT
hypothetical protein
Serine/threonine protein kinase {ECO:0000313|EMBL:AGA24692.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_3650_13
unknown

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comp(13966..14076)
DNA (111bp) protein (37aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_3650_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14073..15011)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00035D980D
SCN18_30_10_14_R2_B_scaffold_3650_15
unknown

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comp(15098..15454)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000309DB2B
Displaying 15 items

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