ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1618

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1618_1
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83..796)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000369FB1B
DNA-directed RNA polymerase sigma-70 {ECO:0000313|EMBL:GAN75795.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1618_2
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(793..1194)
DNA (402bp) protein (134aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW84_9PROT
DNA-directed RNA polymerase sigma-24 factor {ECO:0000313|EMBL:GAN75794.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
RNA polymerase sigma-70 factor, ECF subfamily
SCN18_30_10_14_R2_B_scaffold_1618_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1454..3475)
DNA (2022bp) protein (674aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FA0E54
Lipopolysaccharide biogenesis periplasmic protein {ECO:0000313|EMBL:GAN77122.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
AsmA family protein
SCN18_30_10_14_R2_B_scaffold_1618_4
unknown

Not on your lists

3572..3790
DNA (219bp) protein (73aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1618_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3798..4577)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HQI7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETW96962.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
SCN18_30_10_14_R2_B_scaffold_1618_6
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4625..5320)
DNA (696bp) protein (232aa)
ABC transporter related protein n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NN45_MARHT
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AEB12784.1}; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
SCN18_30_10_14_R2_B_scaffold_1618_7
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5320..6033)
DNA (714bp) protein (238aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:AEB12785.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AEB12785.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
Monosaccharide-transporting ATPase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NN46_MARHT
SCN18_30_10_14_R2_B_scaffold_1618_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6030..6992)
DNA (963bp) protein (321aa)
Inner-membrane translocator id=2834341 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
branched-chain amino acid ABC transporter permease
Tax=RBG_16_Gamma2_65_34_curated
SCN18_30_10_14_R2_B_scaffold_1618_9
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6989..7852)
DNA (864bp) protein (288aa)
ABC-type transporter, integral membrane subunit id=2475302 bin=GWC2_Methylomirabilis_70_16 species=Haloarcula vallismortis genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
Tax=GWC2_Rokubacteria_70_16_curated
SCN18_30_10_14_R2_B_scaffold_1618_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7862..8647)
DNA (786bp) protein (262aa)
Putative dehydrogenase {ECO:0000313|EMBL:CCC99279.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCC99279.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Putative dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGU2_AZOBR
putative dehydrogenase
SCN18_30_10_14_R2_B_scaffold_1618_11
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(8664..9641)
DNA (978bp) protein (326aa)
Oxidoreductase, zinc-binding dehydrogenase family n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TI99_TISMK
oxidoreductase, zinc-binding dehydrogenase family
Oxidoreductase, zinc-binding dehydrogenase family {ECO:0000313|EMBL:AFK52487.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCN18_30_10_14_R2_B_scaffold_1618_12
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9762..10214
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IC12_METNO
Uncharacterized protein {ECO:0000313|EMBL:GAN46173.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1618_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10339..11556
DNA (1218bp) protein (406aa)
ABC transporter permease n=1 Tax=Roseomonas sp. B5 RepID=UPI00030156C0
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHL98184.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative substrate-binding protein
SCN18_30_10_14_R2_B_scaffold_1618_14
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11632..12798
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JYZ6_9PROT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAN78298.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
acyl-CoA dehydrogenase domain-containing protein
SCN18_30_10_14_R2_B_scaffold_1618_15
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12798..14066
DNA (1269bp) protein (423aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3F4_9SPHN
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:AGH48989.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_30_10_14_R2_B_scaffold_1618_16
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14080..15609)
DNA (1530bp) protein (510aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KH97_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGG98257.1}; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
polysaccharide biosynthesis protein
SCN18_30_10_14_R2_B_scaffold_1618_17
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15941..16228)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Amycolatopsis alba RepID=UPI0003647D29
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
SCN18_30_10_14_R2_B_scaffold_1618_18
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16439..17200
DNA (762bp) protein (254aa)
Putative hydrolases or acyltransferases(Alpha/beta hydrolase superfamily) protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2Y7_9PROT
alpha/beta hydrolase fold family protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCN18_30_10_14_R2_B_scaffold_1618_19
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17259..17978
DNA (720bp) protein (240aa)
3-oxoacyl-ACP reductase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00035E55BE
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KGT79155.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
oxidoreductase
Displaying 19 items

View Taxonomy