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SCN18_26_2_15_R2_B_scaffold_3

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Displaying items 1-30 of 840 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_3_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..3047)
DNA (3045bp) protein (1015aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI0003605FF7
Uncharacterized protein {ECO:0000313|EMBL:AKH87164.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
SCN18_26_2_15_R2_B_scaffold_3_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3047..6832)
DNA (3786bp) protein (1262aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI0003605FF7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY44245.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
SCN18_26_2_15_R2_B_scaffold_3_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6961..8274
DNA (1314bp) protein (438aa)
OmpA/MotB domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TEG3_MESCW
OmpA/MotB domain protein {ECO:0000313|EMBL:CDX21354.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
OmpA/MotB domain-containing protein
SCN18_26_2_15_R2_B_scaffold_3_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8295..9422)
DNA (1128bp) protein (376aa)
UPI0003CED579 related cluster n=1 Tax=unknown RepID=UPI0003CED579
Transcriptional regulator {ECO:0000313|EMBL:ESY62629.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
LuxR family transcriptional regulator
SCN18_26_2_15_R2_B_scaffold_3_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9549..9665
DNA (117bp) protein (39aa)
SCN18_26_2_15_R2_B_scaffold_3_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10394..10645)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL09_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67561.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_26_2_15_R2_B_scaffold_3_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10858..11286)
DNA (429bp) protein (143aa)
Transcriptional regulator, MerR family n=1 Tax=Rhodovulum sp. PH10 RepID=J6J2R8_9RHOB
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EJW11065.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
MerR family transcriptional regulator
SCN18_26_2_15_R2_B_scaffold_3_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11390..13624
DNA (2235bp) protein (745aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A643A
ATPase {ECO:0000313|EMBL:KKB81914.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
heavy metal-transporting ATPase
SCN18_26_2_15_R2_B_scaffold_3_trna_6
unknown

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comp(14127..14200)
DNA (74bp)
transferRNA Arg
SCN18_26_2_15_R2_B_scaffold_3_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14262..15695)
DNA (1434bp) protein (478aa)
Signal transduction histidine kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76798.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
signal transduction histidine kinase
SCN18_26_2_15_R2_B_scaffold_3_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15722..17131)
DNA (1410bp) protein (470aa)
Mercuric ion reductase {ECO:0000313|EMBL:CDP51561.1}; EC=1.16.1.1 {ECO:0000313|EMBL:CDP51561.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B3C6A
dihydrolipoamide dehydrogenase
SCN18_26_2_15_R2_B_scaffold_3_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17376..17939
DNA (564bp) protein (188aa)
UPI0003CF1C2E related cluster n=1 Tax=unknown RepID=UPI0003CF1C2E
Uncharacterized protein {ECO:0000313|EMBL:ESW69079.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
type 11 methyltransferase
SCN18_26_2_15_R2_B_scaffold_3_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17909..18058
DNA (150bp) protein (50aa)
SCN18_26_2_15_R2_B_scaffold_3_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18126..18260
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEH8_9RHOB
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
50S ribosomal protein L34
SCN18_26_2_15_R2_B_scaffold_3_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18273..18641
DNA (369bp) protein (123aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Ribonuclease P protein component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE5_PELHB
rnpA; ribonuclease P protein component
SCN18_26_2_15_R2_B_scaffold_3_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18648..20510
DNA (1863bp) protein (621aa)
Membrane protein insertase YidC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE4_PELHB
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
inner membrane protein translocase component YidC, long form
SCN18_26_2_15_R2_B_scaffold_3_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20524..21213
DNA (690bp) protein (230aa)
SCN18_26_2_15_R2_B_scaffold_3_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21276..21638
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CH92_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51919.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_3_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21619..22371)
DNA (753bp) protein (251aa)
3-oxo-5-alpha-steroid 4-dehydrogenase 1 id=3223898 bin=GWF2_Bacteroidetes_41_31 species=SAR86 cluster bacterium SAR86B genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Tax=GWF2_Bacteroidetes_41_31_curated
SCN18_26_2_15_R2_B_scaffold_3_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22500..23132
DNA (633bp) protein (211aa)
Probable GTP-binding protein EngB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE3_PELHB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GTP-binding protein EngB
SCN18_26_2_15_R2_B_scaffold_3_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23235..23663
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7V6_RHOVT
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KAI94594.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCN18_26_2_15_R2_B_scaffold_3_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23840..24556)
DNA (717bp) protein (239aa)
Glutamine amidotransferase, class I n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE2_PELHB
Glutamine amidotransferase {ECO:0000313|EMBL:KKC38065.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
glutamine amidotransferase
SCN18_26_2_15_R2_B_scaffold_3_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24622..25143)
DNA (522bp) protein (174aa)
methionine sulfoxide reductase B (EC:1.8.4.11)
UPI0003CF6D45 related cluster n=1 Tax=unknown RepID=UPI0003CF6D45
Methionine sulfoxide reductase {ECO:0000313|EMBL:ESY27235.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
SCN18_26_2_15_R2_B_scaffold_3_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25337..25897)
DNA (561bp) protein (187aa)
Beta-Ig-H3/fasciclin n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDL7_MESCW
Secreted and surface protein containing fasciclin-like repeats {ECO:0000313|EMBL:CDP53319.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
beta-Ig-H3/fasciclin
SCN18_26_2_15_R2_B_scaffold_3_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26228..26935)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB79331.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCN18_26_2_15_R2_B_scaffold_3_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26932..27477)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CGA7_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:KKB79430.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
sigma-70 family RNA polymerase sigma factor
SCN18_26_2_15_R2_B_scaffold_3_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27601..28509
DNA (909bp) protein (303aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
acetylglutamate kinase (EC:2.7.2.8)
PREDICTED: acetylglutamate kinase, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10D7A
SCN18_26_2_15_R2_B_scaffold_3_27
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28565..30076)
DNA (1512bp) protein (504aa)
Transmembrane efflux protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y5H9_PARAH
MFS transporter {ECO:0000313|EMBL:KKB07415.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transmembrane efflux protein
SCN18_26_2_15_R2_B_scaffold_3_28
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30391..30918
DNA (528bp) protein (176aa)
Serine-rich repeat adhesion glycoprotein (Fragment) n=1 Tax=Streptococcus sp. AS14 RepID=J4X8N7_9STRE
Putative molybdenum cofactor biosynthesis protein C {ECO:0000313|EMBL:EFQ52820.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
cell wall surface anchor family protein
SCN18_26_2_15_R2_B_scaffold_3_29
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31027..31227
DNA (201bp) protein (67aa)
Displaying items 1-30 of 840 in total

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