ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1843

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1843_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..722)
DNA (720bp) protein (240aa)
Putative transcription regulator protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA67_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32292.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transcription regulator protein
SCN18_25_8_15_R2_B_scaffold_1843_2
unknown

Not on your lists

835..981
DNA (147bp) protein (49aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1843_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1038..1466
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32291.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1843_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1473..2363)
DNA (891bp) protein (297aa)
Extensin family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA70_PELHB
extensin
Extensin family protein {ECO:0000313|EMBL:AEQ53553.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_25_8_15_R2_B_scaffold_1843_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2456..4261
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Elongation factor 4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA71_PELHB
translation elongation factor LepA
SCN18_25_8_15_R2_B_scaffold_1843_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4572..7502
DNA (2931bp) protein (977aa)
Uncharacterized protein n=1 Tax=Clostridium thermocellum BC1 RepID=U4MP76_CLOTM
DNA/RNA helicase, superfamily II
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGB18197.1}; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
SCN18_25_8_15_R2_B_scaffold_1843_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7564..8091
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32287.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1843_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8597..10921)
DNA (2325bp) protein (775aa)
gcd; transmembrane glucose dehydrogenase (EC:1.1.5.2)
quinate dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000364EA0E
Quinate dehydrogenase {ECO:0000313|EMBL:KFL32286.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1843_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11270..11962)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RIR8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB78650.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1843_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..12359)
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32285.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1843_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12412..13161)
DNA (750bp) protein (250aa)
Putative zinc metallopeptidase n=1 Tax=uncultured bacterium 1062 RepID=B8R8Z3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFL32284.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
zinc metalloprotease
SCN18_25_8_15_R2_B_scaffold_1843_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13305..13760)
DNA (456bp) protein (152aa)
Putative transmembrane protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8Z4_9BACT
Membrane protein {ECO:0000313|EMBL:KFL32311.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative cytosolic protein
SCN18_25_8_15_R2_B_scaffold_1843_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13901..15205
DNA (1305bp) protein (435aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Sensor histidine kinase PrrB (RegB) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8J2_PELHB
sensor histidine kinase PrrB (RegB)
SCN18_25_8_15_R2_B_scaffold_1843_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15263..15814
DNA (552bp) protein (184aa)
DNA binding response regulator PrrA (RegA) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8J1_PELHB
Chemotaxis protein CheY {ECO:0000313|EMBL:KFL32313.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA binding response regulator PrrA (RegA)
SCN18_25_8_15_R2_B_scaffold_1843_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15911..16261)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRJ5_9RHOB
RNA signal recognition particle 4.5S RNA {ECO:0000313|EMBL:KFL32314.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
RNA signal recognition particle 4.5S RNA
SCN18_25_8_15_R2_B_scaffold_1843_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..17384
DNA (999bp) protein (333aa)
Metallo-beta-lactamase family protein, RNA-specific n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8J0_PELHB
Metallo-beta-lactamase family protein, RNA-specific {ECO:0000313|EMBL:KFC68832.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
metallo-beta-lactamase family protein, RNA-specific
Displaying 16 items

View Taxonomy