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SCN18_25_8_15_R2_B_scaffold_2091

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2091_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..994
DNA (993bp) protein (331aa)
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S0_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL31111.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ribose ABC transport system, ATP-binding protein RbsA
SCN18_25_8_15_R2_B_scaffold_2091_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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975..1979
DNA (1005bp) protein (335aa)
ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB73C8
ABC transporter permease {ECO:0000313|EMBL:KKB76470.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
inner-membrane translocator
SCN18_25_8_15_R2_B_scaffold_2091_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2031..2981
DNA (951bp) protein (317aa)
Ribose ABC transporter, periplasmic ribose-binding protein RbsB n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RPS2_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31109.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative Periplasmic binding proteins and sugar binding domain of the LacI family
SCN18_25_8_15_R2_B_scaffold_2091_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3092..5530)
DNA (2439bp) protein (813aa)
MorA n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QHR6_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KKB76472.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
diguanylate cyclase/phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_2091_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5638..6417)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31108.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cobalamin/Fe3+-siderophore ABC transporter ATPase id=7721558 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
cobalamin/Fe3+-siderophore ABC transporter ATPase
SCN18_25_8_15_R2_B_scaffold_2091_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6414..7475)
DNA (1062bp) protein (354aa)
ABC transporter (Iron.B12.siderophore.hemin) , permease component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X4_PELHB
Iron ABC transporter permease {ECO:0000313|EMBL:KFL31107.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_2091_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..8407)
DNA (933bp) protein (311aa)
ABC transporter (Iron.B12.siderophore.hemin) , periplasmic substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X3_PELHB
Iron transporter {ECO:0000313|EMBL:KFL31106.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_2091_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8411..9238)
DNA (828bp) protein (276aa)
Coenzyme F420-0:L-glutamate ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X2_PELHB
F420-dependent oxidoreductase {ECO:0000313|EMBL:KKB76475.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
coenzyme F420-0:L-glutamate ligase
SCN18_25_8_15_R2_B_scaffold_2091_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9250..10248)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036A651E
Uncharacterized protein {ECO:0000313|EMBL:KFL31105.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
F420-dependent glucose-6-phosphate dehydrogenase
SCN18_25_8_15_R2_B_scaffold_2091_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10371..11372)
DNA (1002bp) protein (334aa)
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X6_PELHB
Methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:KFL31104.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase
SCN18_25_8_15_R2_B_scaffold_2091_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11528..12364
DNA (837bp) protein (279aa)
Probable DNA repair protein KKY_1734 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU4_PELHB
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2091_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12508..15045
DNA (2538bp) protein (846aa)
ykoU3; ATP-dependent DNA ligase YkoU (EC:6.5.1.1)
ATP dependent DNA ligase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YEJ9_MOBAS
ATP-dependent DNA ligase {ECO:0000313|EMBL:KFL31102.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Displaying 12 items

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