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SCN18_25_8_15_R2_B_scaffold_2385

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2385_1
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..706)
DNA (705bp) protein (235aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC:1.1.1.34 2.7.1.36)
hydroxymethylglutaryl-CoA reductase n=1 Tax=Nevskia ramosa RepID=UPI0003B4A07C
SCN18_25_8_15_R2_B_scaffold_2385_2
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(738..1769)
DNA (1032bp) protein (344aa)
Mevalonate kinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NUA0_9GAMM
mevalonate kinase
Mevalonate kinase {ECO:0000313|EMBL:AGG90996.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_25_8_15_R2_B_scaffold_2385_3
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1766..2764)
DNA (999bp) protein (333aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33)
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:AGG90995.1}; EC=4.1.1.33 {ECO:0000313|EMBL:AGG90995.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Diphosphomevalonate decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ93_9GAMM
SCN18_25_8_15_R2_B_scaffold_2385_4
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3054..3980
DNA (927bp) protein (309aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter denitrificans RepID=I4WL76_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AGG88416.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_25_8_15_R2_B_scaffold_2385_5
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4017..4283)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD99_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97440.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DnaK suppressor protein
SCN18_25_8_15_R2_B_scaffold_2385_6
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4441..5820)
DNA (1380bp) protein (460aa)
D-alanine/D-serine/glycine permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7I6_9GAMM
D-alanine/D-serine/glycine permease {ECO:0000313|EMBL:EIL95427.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cycA; D-alanine/D-serine/glycine permease
SCN18_25_8_15_R2_B_scaffold_2385_7
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5885..6394)
DNA (510bp) protein (170aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWL8_9GAMM
methionine-S-sulfoxide reductase
SCN18_25_8_15_R2_B_scaffold_2385_8
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6391..6840)
DNA (450bp) protein (150aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWL7_9GAMM
SCN18_25_8_15_R2_B_scaffold_2385_9
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7087..7800)
DNA (714bp) protein (238aa)
oxidoreductase n=1 Tax=Lentibacillus jeotgali RepID=UPI00026258E9
Uncharacterized protein {ECO:0000313|EMBL:KKM26749.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oxidoreductase FAD/NAD(P)-binding protein
SCN18_25_8_15_R2_B_scaffold_2385_10
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8313..11267
DNA (2955bp) protein (985aa)
TonB-denpendent receptor n=1 Tax=Dyella ginsengisoli RepID=UPI00034CF46D
outer membrane cobalamin receptor protein
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AGG90558.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_25_8_15_R2_B_scaffold_2385_11
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11516..13228
DNA (1713bp) protein (571aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YN3_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying 11 items

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