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SCN18_14_9_16_R4_B_scaffold_1277

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1277_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6..1391)
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--alanine ligase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3B65A
Mur ligase family, catalytic domain protein {ECO:0000313|EMBL:EZP52547.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
UDP-N-acetylmuramate--alanine ligase
SCN18_14_9_16_R4_B_scaffold_1277_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1639..2460
DNA (822bp) protein (274aa)
LD-carboxypeptidase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZI2_9SPHN
carboxypeptidase
Carboxypeptidase {ECO:0000313|EMBL:AIT06800.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1277_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2617..5217)
DNA (2601bp) protein (867aa)
DNA mismatch repair protein MutS n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6549F
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
DNA mismatch repair protein MutS
SCN18_14_9_16_R4_B_scaffold_1277_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5267..5824
DNA (558bp) protein (186aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:ABQ71017.1}; EC=3.2.2.20 {ECO:0000313|EMBL:ABQ71017.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
DNA-3-methyladenine glycosylase I n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFF1_SPHWW
SCN18_14_9_16_R4_B_scaffold_1277_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5874..8132
DNA (2259bp) protein (753aa)
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28048.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KIU28048.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
malic enzyme (EC:1.1.1.40)
malic enzyme n=1 Tax=Sphingomonas melonis RepID=UPI000376F18B
SCN18_14_9_16_R4_B_scaffold_1277_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8335..8742
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288627C
Surface antigen {ECO:0000313|EMBL:KIY14667.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
surface antigen
SCN18_14_9_16_R4_B_scaffold_1277_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8872..9198
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0M5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02884.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1277_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9199..10161)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000366E370
cell wall hydrolase
Cell wall hydrolase {ECO:0000313|EMBL:AIT08355.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1277_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10216..13029)
DNA (2814bp) protein (938aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380152D
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26186.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
peptidase M16
SCN18_14_9_16_R4_B_scaffold_1277_10
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13039..13467)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI000377C31E
Uncharacterized protein {ECO:0000313|EMBL:KCZ54802.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
SCN18_14_9_16_R4_B_scaffold_1277_11
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13524..13838)
DNA (315bp) protein (105aa)
SCN18_14_9_16_R4_B_scaffold_1277_12
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13835..14032)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0M2_9SPHN
DNA, contig: SP602 {ECO:0000313|EMBL:GAN12060.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1277_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14035..15174)
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
queuine tRNA-ribosyltransferase n=1 Tax=Sphingomonas melonis RepID=UPI0003782012
queuine tRNA-ribosyltransferase
SCN18_14_9_16_R4_B_scaffold_1277_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15197..15691)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003799C15
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26189.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
calcium-binding protein
SCN18_14_9_16_R4_B_scaffold_1277_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15945..16913)
DNA (969bp) protein (323aa)
Regulatory protein, LuxR n=2 Tax=Sphingomonas wittichii RepID=A5VBM0_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:AHE54227.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
regulatory protein LuxR
SCN18_14_9_16_R4_B_scaffold_1277_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16967..17881
DNA (915bp) protein (305aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBM1_SPHWW
SCN18_14_9_16_R4_B_scaffold_1277_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17881..19794
DNA (1914bp) protein (638aa)
Adenylylsulfate kinase {ECO:0000313|EMBL:AHE54225.1}; EC=2.7.1.25 {ECO:0000313|EMBL:AHE54225.1};; EC=2.7.7.4 {ECO:0000313|EMBL:AHE54225.1};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein (EC:2.7.7.4)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8H4_9SPHN
SCN18_14_9_16_R4_B_scaffold_1277_18
unknown

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19881..19964
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 18 items

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