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SCN18_14_9_16_R4_B_scaffold_1840

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1840_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..2268)
DNA (2268bp) protein (756aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036A28B8
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AIT06541.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1840_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2739..3098
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNE8_SPHAL
Putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:AJA07346.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_14_9_16_R4_B_scaffold_1840_3
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3271..4362
DNA (1092bp) protein (364aa)
Putative AraC-family transcriptional regulator n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82MJ3_STRAW
AraC family transcription regulator
Putative AraC-family transcriptional regulator {ECO:0000313|EMBL:BAC69378.1}; TaxID=227882 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
SCN18_14_9_16_R4_B_scaffold_1840_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4413..6140)
DNA (1728bp) protein (576aa)
acyl-CoA synthetase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC571
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12271.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
acyl-CoA synthetase
SCN18_14_9_16_R4_B_scaffold_1840_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6251..6796
DNA (546bp) protein (182aa)
regulatory protein RecX n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B481FD
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27983.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
RecX family transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1840_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6929..7447
DNA (519bp) protein (173aa)
cold-shock protein n=2 Tax=Sphingomonas melonis RepID=UPI000373560C
cold-shock protein
Cold-shock protein {ECO:0000313|EMBL:AIT06538.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_1840_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7449..7934
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC574
Uncharacterized protein {ECO:0000313|EMBL:GAM02954.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1840_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7978..8508
DNA (531bp) protein (177aa)
NADH dehydrogenase (EC:1.6.99.3)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYI8_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12275.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCN18_14_9_16_R4_B_scaffold_1840_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8505..9173
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A451
Uncharacterized protein {ECO:0000313|EMBL:EZP54677.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1840_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8978..9715)
DNA (738bp) protein (246aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380EC00
leucyl-tRNA--protein transferase
Displaying 10 items

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