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SCN18_30_10_14_R1_B_scaffold_2266

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2266_1
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..665
DNA (663bp) protein (221aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1349820 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-YN10.;"
Pseudouridine synthase n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1ZVJ5_9MICC
RNA RluA family pseudouridine synthase
SCN18_30_10_14_R1_B_scaffold_2266_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(557..1792)
DNA (1236bp) protein (412aa)
Cysteine desulfurase {ECO:0000313|EMBL:BAK66013.1}; EC=2.8.1.7 {ECO:0000313|EMBL:BAK66013.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cysteine desulfurase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQZ1_9SPHN
iscS; cysteine desulfurase
SCN18_30_10_14_R1_B_scaffold_2266_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1789..2841)
DNA (1053bp) protein (351aa)
Cysteine desulfurase {ECO:0000313|EMBL:BAK66012.1}; EC=2.8.1.7 {ECO:0000313|EMBL:BAK66012.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cysteine desulfurase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQZ0_9SPHN
iscS; cysteine desulfurase
SCN18_30_10_14_R1_B_scaffold_2266_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2984..3640
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66011.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3766..4665)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXH1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50089.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
permease, DMT superfamily
SCN18_30_10_14_R1_B_scaffold_2266_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4658..6445)
DNA (1788bp) protein (596aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY7_9SPHN
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK66009.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6573..7334
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66008.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7396..7710
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66007.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7762..8427
DNA (666bp) protein (222aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY4_9SPHN
OmpR family two-component system response regulator
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK66006.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8411..9793
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY3_9SPHN
two-component system sensor histidine kinase
SCN18_30_10_14_R1_B_scaffold_2266_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9807..10124)
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZH9_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR25997.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2266_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10286..11887)
DNA (1602bp) protein (534aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT9_9SPHN
pckA; phosphoenolpyruvate carboxykinase
SCN18_30_10_14_R1_B_scaffold_2266_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12149..12856
DNA (708bp) protein (236aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT8_9SPHN
OmpR family two-component system response regulator
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK66154.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_14
unknown

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comp(12843..13325)
DNA (483bp) protein (161aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2266_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13633..14307
DNA (675bp) protein (225aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT7_9SPHN
two-component system sensor histidine kinase
SCN18_30_10_14_R1_B_scaffold_2266_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14311..14754
DNA (444bp) protein (148aa)
HPr kinase/phosphorylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT6_9SPHN
HPr kinase/phosphorylase
HPr kinase/phosphorylase {ECO:0000313|EMBL:BAK66152.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14751..15707
DNA (957bp) protein (319aa)
UPF0042 nucleotide-binding protein SLG_14760 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT5_9SPHN
putative P-loop-containing ATPase
Nucleotide-binding protein SLG_14760 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15713..16117
DNA (405bp) protein (135aa)
PTS system IIA component {ECO:0000313|EMBL:BAK66150.1}; EC=2.7.1.69 {ECO:0000313|EMBL:BAK66150.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PTS system IIA component n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT4_9SPHN
PTS system transporter subunit IIA
SCN18_30_10_14_R1_B_scaffold_2266_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16114..16404
DNA (291bp) protein (97aa)
Phosphocarrier protein HPr n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT3_9SPHN
ptsH; phosphocarrier protein HPr
Phosphocarrier protein HPr {ECO:0000313|EMBL:BAK66149.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16490..17293
DNA (804bp) protein (268aa)
RNA methyltransferase {ECO:0000313|EMBL:BAK66148.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK66148.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT2_9SPHN
RNA methyltransferase
SCN18_30_10_14_R1_B_scaffold_2266_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17309..18439)
DNA (1131bp) protein (377aa)
Chemotaxis protein MotB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX4_9SPHN
motB; chemotaxis protein MotB
Chemotaxis protein MotB {ECO:0000313|EMBL:BAK65996.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_22
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18467..19330)
DNA (864bp) protein (288aa)
Chemotaxis protein MotA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX3_9SPHN
motA; chemotaxis protein MotA
Chemotaxis protein MotA {ECO:0000313|EMBL:BAK65995.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19542..20378)
DNA (837bp) protein (279aa)
Flagellar hook-associated protein 3 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX2_9SPHN
flgL; flagellar hook-associated protein 3
Flagellar hook-associated protein 3 {ECO:0000313|EMBL:BAK65994.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2266_24
unknown

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comp(20405..20494)
DNA (90bp) protein (30aa)
flgK; flagellar hook-associated protein 1 FlgK
Displaying 24 items

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