ggKbase home page

SCN18_30_10_14_R1_B_scaffold_2274

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2274_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..140)
DNA (138bp) protein (46aa)
Putative ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS93_9SPHN
putative ABC transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2274_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

285..998
DNA (714bp) protein (238aa)
Cell cycle regulator GcrA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS92_9SPHN
cell cycle regulator GcrA
Cell cycle regulator GcrA {ECO:0000313|EMBL:BAK66252.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2274_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1229..3208
DNA (1980bp) protein (660aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA topoisomerase 4 subunit B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS90_9SPHN
parE; DNA topoisomerase IV subunit B
SCN18_30_10_14_R1_B_scaffold_2274_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3293..5818
DNA (2526bp) protein (842aa)
putative ATPase (EC:3.6.1.- 3.6.3.8)
ATPase n=1 Tax=Sphingobium baderi LL03 RepID=T0HX54_9SPHN
ATPase {ECO:0000313|EMBL:EQB02139.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCN18_30_10_14_R1_B_scaffold_2274_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5825..7273)
DNA (1449bp) protein (483aa)
Putative NtrC family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS89_9SPHN
putative NtrC family two-component system response regulator
Putative NtrC family two-component system response regulator {ECO:0000313|EMBL:BAK66249.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2274_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7446..7568
DNA (123bp) protein (41aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP71794.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_2274_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7597..8724
DNA (1128bp) protein (376aa)
Nicotinamide nucleotide transhydrogenase alpha subunit 1 PntAA {ECO:0000313|EMBL:BAK66248.1}; EC=1.6.1.2 {ECO:0000313|EMBL:BAK66248.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD(P) transhydrogenase subunit alpha n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS88_9SPHN
pntAA; nicotinamide nucleotide transhydrogenase subunit alpha 1 PntAA
SCN18_30_10_14_R1_B_scaffold_2274_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8894..9178
DNA (285bp) protein (95aa)
Nicotinamide nucleotide transhydrogenase alpha subunit 2 PntAB {ECO:0000313|EMBL:BAK66247.1}; EC=1.6.1.2 {ECO:0000313|EMBL:BAK66247.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nicotinamide nucleotide transhydrogenase alpha subunit 2 PntAB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS87_9SPHN
pntAB; nicotinamide nucleotide transhydrogenase subunit alpha 2 PntAB
SCN18_30_10_14_R1_B_scaffold_2274_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9178..10593
DNA (1416bp) protein (472aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS86_9SPHN
pntB; nicotinamide nucleotide transhydrogenase subunit beta PntB
SCN18_30_10_14_R1_B_scaffold_2274_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10666..11364
DNA (699bp) protein (233aa)
Aspartate racemase family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS85_9SPHN
aspartate racemase
Aspartate racemase family protein {ECO:0000313|EMBL:BAK66245.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2274_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11564..12298)
DNA (735bp) protein (245aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS82_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK66242.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2274_trna_1
unknown

Not on your lists

12515..12588
DNA (74bp)
transferRNA Arg
SCN18_30_10_14_R1_B_scaffold_2274_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12867..13535)
DNA (669bp) protein (223aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
CTP synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II36_9SPHN
pyrG; CTP synthase
Displaying 13 items

View Taxonomy