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SCN18_30_10_14_R1_B_scaffold_2552

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2552_1
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..319
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM77_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65332.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2552_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(478..1797)
DNA (1320bp) protein (440aa)
Di-and tricarboxylate transporters-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBC0_NOVAD
di- and tricarboxylate transporters-like
Di-and tricarboxylate transporters-like protein {ECO:0000313|EMBL:ABD24853.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_2552_3
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2017..2805
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBB9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24854.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_2552_4
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2827..4026)
DNA (1200bp) protein (400aa)
Na(+)/H(+) antiporter NhaA 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=NHAA1_NOVAD
Na+/H+ antiporter NhaA
Na(+)/H(+) antiporter NhaA 1 {ECO:0000255|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA 1 {ECO:0000255|HAMAP-Rule:MF_01844}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_2552_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4500..5201)
DNA (702bp) protein (234aa)
Isochorismatase hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6M6_NOVAD
Isochorismatase hydrolase {ECO:0000313|EMBL:KHS49014.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
isochorismatase hydrolase
SCN18_30_10_14_R1_B_scaffold_2552_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5339..5887
DNA (549bp) protein (183aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI8_9SPHN
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65051.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2552_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5966..6304
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65050.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2552_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6553..7047)
DNA (495bp) protein (165aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI5_9SPHN
ruvC; crossover junction endodeoxyribonuclease RuvC
SCN18_30_10_14_R1_B_scaffold_2552_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7072..7422)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W2X0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14668.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2552_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7422..8165)
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein Sphch_2863 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ETS1_SPHCR
hypothetical protein
Probable transcriptional regulatory protein BV95_03871 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCN18_30_10_14_R1_B_scaffold_2552_11
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8330..9760
DNA (1431bp) protein (477aa)
Peptidase M20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G329_NOVAD
Peptidase M20:Peptidase dimerisation {ECO:0000313|EMBL:GAO54839.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2552_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9834..11813
DNA (1980bp) protein (660aa)
DNA polymerase I {ECO:0000313|EMBL:BAK65044.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK65044.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA polymerase I n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI1_9SPHN
polA; DNA polymerase I
Displaying 12 items

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