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SCN18_30_10_14_R1_B_scaffold_2577

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2577_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..720)
DNA (720bp) protein (240aa)
Protocatechuate 4,5-dioxygenase beta chain {ECO:0000313|EMBL:BAK64855.1}; EC=1.13.11.8 {ECO:0000313|EMBL:BAK64855.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protocatechuate 4,5-dioxygenase beta chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI5_9SPHN
protocatechuate 4,5-dioxygenase subunit beta
SCN18_30_10_14_R1_B_scaffold_2577_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(720..1121)
DNA (402bp) protein (134aa)
Protocatechuate 4,5-dioxygenase alpha chain {ECO:0000313|EMBL:BAK64854.1}; EC=1.13.11.8 {ECO:0000313|EMBL:BAK64854.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protocatechuate 4,5-dioxygenase alpha chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI4_9SPHN
protocatechuate 4,5-dioxygenase subunit alpha
SCN18_30_10_14_R1_B_scaffold_2577_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1373..1561)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00035D1BB5
Uncharacterized protein {ECO:0000313|EMBL:KJS32360.1}; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2577_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1654..2925)
DNA (1272bp) protein (424aa)
Sugar phosphate permease n=1 Tax=Novosphingobium sp. AP12 RepID=J3AL68_9SPHN
Sugar phosphate permease {ECO:0000313|EMBL:EJL33476.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
major facilitator transporter
SCN18_30_10_14_R1_B_scaffold_2577_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3377)
DNA (453bp) protein (151aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q038_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJL33477.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
MarR family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_2577_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3424..4098)
DNA (675bp) protein (225aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|RuleBase:RU000512, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|RuleBase:RU000512, ECO:0000256|SAAS:SAAS00032220};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II52_9SPHN
pyrF; orotidine 5'-phosphate decarboxylase
SCN18_30_10_14_R1_B_scaffold_2577_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4095..4457)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II51_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66974.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4622..5941)
DNA (1320bp) protein (440aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Adenylosuccinate lyase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II50_9SPHN
purB; adenylosuccinate lyase
SCN18_30_10_14_R1_B_scaffold_2577_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..6774
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II49_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66972.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6850..7524)
DNA (675bp) protein (225aa)
DNA repair protein RadC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II48_9SPHN
radC; DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:BAK66971.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7619..10837
DNA (3219bp) protein (1073aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II47_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66970.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2577_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10834..11043
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBV6_9SPHN
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCN18_30_10_14_R1_B_scaffold_2577_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11040..11432
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II45_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66968.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11714..11959
DNA (246bp) protein (82aa)
ATP synthase protein I {ECO:0000313|EMBL:BAK66967.1}; EC=3.6.3.14 {ECO:0000313|EMBL:BAK66967.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATP synthase protein I n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II44_9SPHN
atpI; ATP synthase protein I
SCN18_30_10_14_R1_B_scaffold_2577_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12031..12789
DNA (759bp) protein (253aa)
atpB; F0F1-type ATP synthase subunit a (EC:3.6.3.14)
F0F1 ATP synthase subunit A n=1 Tax=Sphingobium xenophagum RepID=UPI000300EFD2
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCN18_30_10_14_R1_B_scaffold_2577_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12836..13063
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9P3_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC63598.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCN18_30_10_14_R1_B_scaffold_2577_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13153..13638
DNA (486bp) protein (162aa)
ATP synthase subunit b n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II41_9SPHN
atpX; ATP synthase subunit B'
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13638..14261
DNA (624bp) protein (208aa)
ATP synthase subunit b n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II40_9SPHN
atpF; ATP synthase subunit B
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2577_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14335..15090)
DNA (756bp) protein (252aa)
Putative methyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2H5L2_9CAUL
Putative methyltransferase {ECO:0000313|EMBL:EJL30683.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2577_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15159..16874
DNA (1716bp) protein (572aa)
UvrABC system protein C n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II39_9SPHN
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
uvrC; UvrABC system protein C
Displaying 20 items

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