ggKbase home page

SCN18_30_10_14_R1_B_scaffold_2808

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2808_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1594)
DNA (1593bp) protein (531aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:BAK64832.1}; EC=2.3.2.2 {ECO:0000313|EMBL:BAK64832.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Gamma-glutamyltranspeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG2_9SPHN
ggt; gamma-glutamyltranspeptidase
SCN18_30_10_14_R1_B_scaffold_2808_2
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2074..3393)
DNA (1320bp) protein (440aa)
Putative manganese transport protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKS0_CAUST
manganese transport protein
Putative manganese transport protein {ECO:0000313|EMBL:ADG11093.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCN18_30_10_14_R1_B_scaffold_2808_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3735..5498
DNA (1764bp) protein (588aa)
Long-chain fatty-acid--CoA ligase {ECO:0000313|EMBL:BAK64831.1}; EC=6.2.1.3 {ECO:0000313|EMBL:BAK64831.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Long-chain fatty-acid--CoA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG1_9SPHN
long-chain fatty-acid--CoA ligase
SCN18_30_10_14_R1_B_scaffold_2808_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5594..6616)
DNA (1023bp) protein (341aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Moorea producens 3L RepID=F4XU33_9CYAN
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EGJ32009.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
O-methyltransferase
SCN18_30_10_14_R1_B_scaffold_2808_5
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6852..7799)
DNA (948bp) protein (316aa)
Putative oxygenase/oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT0_9SPHN
putative oxygenase/oxidoreductase
Putative oxygenase/oxidoreductase {ECO:0000313|EMBL:BAK64760.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2808_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7940..8353
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64759.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2808_7
unknown

Not on your lists

comp(8235..8801)
DNA (567bp) protein (189aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2808_8
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9423..10088)
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64758.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2808_9
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..10670)
DNA (267bp) protein (89aa)
60 kDa chaperonin n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IAL8_9SPHN
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
groEL; chaperonin GroEL
Displaying 9 items

View Taxonomy