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SCN18_30_10_14_R1_B_scaffold_2895

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2895_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..242)
DNA (240bp) protein (80aa)
Putative ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:BAK67101.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAK67101.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative ATP-dependent DNA helicase RecG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIH8_9SPHN
recG; putative ATP-dependent DNA helicase RecG
SCN18_30_10_14_R1_B_scaffold_2895_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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410..676
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIH9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67102.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

821..4303
DNA (3483bp) protein (1161aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Transcription-repair-coupling factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III0_9SPHN
mfd; transcription-repair-coupling factor
SCN18_30_10_14_R1_B_scaffold_2895_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4435..5430
DNA (996bp) protein (332aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQN0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65902.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_5
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5502..6755)
DNA (1254bp) protein (418aa)
Na+/H+ dicarboxylate symporter n=1 Tax=Rhizobium sp. AP16 RepID=J2DUX4_9RHIZ
C4-dicarboxylate transport protein {ECO:0000313|EMBL:GAJ92934.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
dctA; C4-dicarboxylate transporter protein
SCN18_30_10_14_R1_B_scaffold_2895_6
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7043..8503
DNA (1461bp) protein (487aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67106.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8609..10372
DNA (1764bp) protein (588aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:BAK67107.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAK67107.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATP-dependent DNA helicase RecQ n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III4_9SPHN
recQ; ATP-dependent DNA helicase RecQ
SCN18_30_10_14_R1_B_scaffold_2895_8
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10400..10666)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVZ1_SPHAL
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_30_10_14_R1_B_scaffold_2895_9
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10711..11376)
DNA (666bp) protein (222aa)
Putative methyltransferase {ECO:0000313|EMBL:BAK67109.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK67109.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III6_9SPHN
putative methyltransferase
SCN18_30_10_14_R1_B_scaffold_2895_10
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11376..12581)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67110.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_11
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12815..13216
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS48_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66208.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_12
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..13828
DNA (474bp) protein (158aa)
Uncharacterized protein n=5 Tax=Methylobacterium extorquens RepID=A9VX36_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY31491.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCN18_30_10_14_R1_B_scaffold_2895_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13825..14805)
DNA (981bp) protein (327aa)
Putative L-threo-3-hydroxy aspartate dehydratase {ECO:0000313|EMBL:BAK67113.1}; EC=4.3.1.16 {ECO:0000313|EMBL:BAK67113.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative L-threo-3-hydroxy aspartate dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ0_9SPHN
putative L-threo-3-hydroxy aspartate dehydratase
SCN18_30_10_14_R1_B_scaffold_2895_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14859..16067
DNA (1209bp) protein (403aa)
Putative saccharopine dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ1_9SPHN
putative saccharopine dehydrogenase
Putative saccharopine dehydrogenase {ECO:0000313|EMBL:BAK67114.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16217..16573
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67115.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16590..17771
DNA (1182bp) protein (394aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Carboxynorspermidine/carboxyspermidine decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ3_9SPHN
putative diaminopimelate decarboxylase
SCN18_30_10_14_R1_B_scaffold_2895_17
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17921..18709)
DNA (789bp) protein (263aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P2T1_9CAUL
SCN18_30_10_14_R1_B_scaffold_2895_18
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18693..19418)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00035CC1CE
Uncharacterized protein {ECO:0000313|EMBL:KJH82355.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2895_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19755..20954
DNA (1200bp) protein (400aa)
Ornithine decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIU9_9SPHN
ornithine decarboxylase
Ornithine decarboxylase {ECO:0000313|EMBL:BAK67119.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21117..21548
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIV0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67120.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2895_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21526..22380)
DNA (855bp) protein (285aa)
RNA methyltransferase {ECO:0000313|EMBL:BAK67121.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK67121.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIV1_9SPHN
RNA methyltransferase
Displaying 21 items

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