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SCN18_30_10_14_R1_B_scaffold_2979

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2979_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..225)
DNA (225bp) protein (75aa)
Putative glucosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA4_9SPHN
putative glucosyltransferase
Putative glucosyltransferase {ECO:0000313|EMBL:BAK68085.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..1860)
DNA (1596bp) protein (532aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68086.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2079..2654
DNA (576bp) protein (192aa)
Putative transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA6_9SPHN
putative transporter
Putative transporter {ECO:0000313|EMBL:BAK68087.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2689..3822
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68088.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3822..5321
DNA (1500bp) protein (500aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68089.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5360..6169
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68090.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_7
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6349..7716)
DNA (1368bp) protein (456aa)
UPI0003D620F5 related cluster n=1 Tax=unknown RepID=UPI0003D620F5
Amidohydrolase {ECO:0000313|EMBL:ETI59072.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
amidohydrolase family protein
SCN18_30_10_14_R1_B_scaffold_2979_8
unknown

Not on your lists

comp(7713..7877)
DNA (165bp) protein (55aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2979_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8036..8920
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HIE4_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:EQB12782.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
transcription regulator, LysR family protein
SCN18_30_10_14_R1_B_scaffold_2979_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8988..10022
DNA (1035bp) protein (345aa)
UPI0003D59EC0 related cluster n=1 Tax=unknown RepID=UPI0003D59EC0
Uncharacterized protein {ECO:0000313|EMBL:ETI59074.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2979_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10030..11025
DNA (996bp) protein (332aa)
L-Ala-D/L-Glu epimerase (EC:5.1.1.-)
mandelate racemase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035F2231
Mandelate racemase {ECO:0000313|EMBL:KGB56229.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCN18_30_10_14_R1_B_scaffold_2979_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11022..12260
DNA (1239bp) protein (413aa)
UPI0003D5B728 related cluster n=1 Tax=unknown RepID=UPI0003D5B728
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ETI59076.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
proton/glutamate symporter
SCN18_30_10_14_R1_B_scaffold_2979_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..13641)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U0L1_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC23295.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCN18_30_10_14_R1_B_scaffold_2979_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13638..14342)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X3L2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EON14067.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2979_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14491..15276
DNA (786bp) protein (262aa)
Transcriptional regulator, IclR family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5J8_9PROT
Transcriptional regulator, IclR family protein {ECO:0000313|EMBL:EHL97532.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
iclR; IclR family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_2979_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15311..16156
DNA (846bp) protein (282aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5J2_9PROT
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EHL97526.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
short-chain dehydrogenase/reductase SDR
SCN18_30_10_14_R1_B_scaffold_2979_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16156..16947
DNA (792bp) protein (264aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
PAP2 superfamily protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2V5_9SPHN
phosphatidic acid phosphatase
SCN18_30_10_14_R1_B_scaffold_2979_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17027..17836
DNA (810bp) protein (270aa)
TonB-dependent outer membrane receptor n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGG6_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:GAM07616.1}; TaxID=1206458 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MBES04.;"
TonB-dependent receptor
SCN18_30_10_14_R1_B_scaffold_2979_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17787..19715
DNA (1929bp) protein (643aa)
TonB-dependent receptor, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQV7_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP74744.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R1_B_scaffold_2979_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20577..21299
DNA (723bp) protein (241aa)
LuxR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL9_9SPHN
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:BAK67998.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21543..22115
DNA (573bp) protein (191aa)
Putative portal protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL8_9SPHN
putative portal protein
Putative portal protein {ECO:0000313|EMBL:BAK67997.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_22
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22139..22621
DNA (483bp) protein (161aa)
Putative portal protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL8_9SPHN
putative portal protein
Putative portal protein {ECO:0000313|EMBL:BAK67997.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2979_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22618..22875
DNA (258bp) protein (86aa)
Putative prohead protease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL7_9SPHN
putative prohead protease
Putative prohead protease {ECO:0000313|EMBL:BAK67996.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 23 items

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