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SCN18_30_10_14_R1_B_scaffold_1324

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1324_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1229
DNA (1227bp) protein (409aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL9_9SPHN
gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B
SCN18_30_10_14_R1_B_scaffold_1324_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1304..2314)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ19_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCN18_30_10_14_R1_B_scaffold_1324_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2467..2646)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66728.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1324_trna_1
unknown

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2771..2852
DNA (82bp)
transferRNA Leu
SCN18_30_10_14_R1_B_scaffold_1324_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2926..4512
DNA (1587bp) protein (529aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Trigger factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL7_9SPHN
tig; trigger factor
SCN18_30_10_14_R1_B_scaffold_1324_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4524..5486
DNA (963bp) protein (321aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK66726.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK66726.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL6_9SPHN
putative glycosyltransferase
SCN18_30_10_14_R1_B_scaffold_1324_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5580..6710
DNA (1131bp) protein (377aa)
acyltransferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002883888
acyltransferase
Acyltransferase {ECO:0000313|EMBL:AGH48853.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_30_10_14_R1_B_scaffold_1324_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6770..7408
DNA (639bp) protein (213aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL5_9SPHN
clpP; ATP-dependent Clp protease proteolytic subunit
SCN18_30_10_14_R1_B_scaffold_1324_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8003..9271
DNA (1269bp) protein (423aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL4_9SPHN
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1324_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9482..10696)
DNA (1215bp) protein (405aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK66722.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK66722.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITL2_9SPHN
putative glycosyltransferase
SCN18_30_10_14_R1_B_scaffold_1324_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10754..12061)
DNA (1308bp) protein (436aa)
sodium:proton antiporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E1E903
Sodium:proton antiporter {ECO:0000313|EMBL:KHL25129.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
sodium:proton antiporter
SCN18_30_10_14_R1_B_scaffold_1324_trna_2
unknown

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comp(12209..12280)
DNA (72bp)
transferRNA Asn
SCN18_30_10_14_R1_B_scaffold_1324_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12346..13116)
DNA (771bp) protein (257aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITK3_9SPHN
ppnK; inorganic polyphosphate/ATP-NAD kinase
SCN18_30_10_14_R1_B_scaffold_1324_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13133..14164)
DNA (1032bp) protein (344aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITK2_9SPHN
moaA; molybdenum cofactor biosynthesis protein A
SCN18_30_10_14_R1_B_scaffold_1324_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14284..16347
DNA (2064bp) protein (688aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITK1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66711.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1324_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16344..17027)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z738_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI98896.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCN18_30_10_14_R1_B_scaffold_1324_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17087..17545
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYZ8_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG49239.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCN18_30_10_14_R1_B_scaffold_1324_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17601..18821)
DNA (1221bp) protein (407aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
5-aminolevulinate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITK0_9SPHN
5-aminolevulinate synthase
SCN18_30_10_14_R1_B_scaffold_1324_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18926..19738)
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutamate racemase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ9_9SPHN
murI; glutamate racemase
SCN18_30_10_14_R1_B_scaffold_1324_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19908..20915
DNA (1008bp) protein (336aa)
Hydroxyneurosporene-O-methyltransferase {ECO:0000313|EMBL:BAK68152.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK68152.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Hydroxyneurosporene-O-methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH1_9SPHN
hydroxyneurosporene-O-methyltransferase
SCN18_30_10_14_R1_B_scaffold_1324_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21026..21898)
DNA (873bp) protein (291aa)
Bifunctional protein FolD n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ7_9SPHN
folD; methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1324_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22245..23288
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B792EA
Capsular polysaccharide biosynthesis O-acetyl transferase {ECO:0000313|EMBL:EIZ78463.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
acyltransferase 3
SCN18_30_10_14_R1_B_scaffold_1324_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23308..23562)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66432.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 23 items

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