ggKbase home page

SCN18_30_10_14_R1_B_scaffold_1796

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1796_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..634
DNA (633bp) protein (211aa)
Ubiquinol-cytochrome c reductase cytochrome c1 subunit {ECO:0000313|EMBL:BAK68101.1}; EC=1.10.2.2 {ECO:0000313|EMBL:BAK68101.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinol-cytochrome c reductase cytochrome c1 subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC0_9SPHN
petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit
SCN18_30_10_14_R1_B_scaffold_1796_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1043..2110)
DNA (1068bp) protein (356aa)
Putative iron-sulfur protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INF8_9SPHN
putative iron-sulfur protein
Putative iron-sulfur protein {ECO:0000313|EMBL:BAK67937.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2166..2750
DNA (585bp) protein (195aa)
Putative TetR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=E1CJ69_9SPHN
TetR family transcriptional regulator
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:BAJ11990.1}; TetR family transcriptional regulator {ECO:0000313|EMBL:BAK67936.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2846..3916)
DNA (1071bp) protein (357aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB0_9SPHN
rmlB; dTDP-glucose 4,6-dehydratase
SCN18_30_10_14_R1_B_scaffold_1796_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3909..4775)
DNA (867bp) protein (289aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:BAK68092.1}; EC=1.1.1.133 {ECO:0000313|EMBL:BAK68092.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB1_9SPHN
rmlD; dTDP-4-dehydrorhamnose reductase
SCN18_30_10_14_R1_B_scaffold_1796_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4772..5317)
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:BAK68093.1}; EC=5.1.3.13 {ECO:0000313|EMBL:BAK68093.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB2_9SPHN
rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase
SCN18_30_10_14_R1_B_scaffold_1796_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5314..6192)
DNA (879bp) protein (293aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB3_9SPHN
rmlA; glucose-1-phosphate thymidylyltransferase
SCN18_30_10_14_R1_B_scaffold_1796_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6427..6684
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68095.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6797..8098
DNA (1302bp) protein (434aa)
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAK68096.1}; EC=1.1.1.22 {ECO:0000313|EMBL:BAK68096.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB5_9SPHN
UDP-glucose 6-dehydrogenase
SCN18_30_10_14_R1_B_scaffold_1796_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8095..9084
DNA (990bp) protein (330aa)
NAD dependent epimerase/dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B71BAE
Short chain dehydrogenase family protein {ECO:0000313|EMBL:EZP69699.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
putative NAD-dependent epimerase/dehydratase
SCN18_30_10_14_R1_B_scaffold_1796_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9126..9989
DNA (864bp) protein (288aa)
UTP-glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:BAK68098.1}; EC=2.7.7.9 {ECO:0000313|EMBL:BAK68098.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB7_9SPHN
UTP-glucose-1-phosphate uridylyltransferase
SCN18_30_10_14_R1_B_scaffold_1796_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..10734)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP86_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68067.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..11936
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP85_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68066.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12001..12294)
DNA (294bp) protein (98aa)
50S ribosomal protein L28 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP84_9SPHN
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12435..12893
DNA (459bp) protein (153aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative deaminase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP83_9SPHN
putative deaminase
SCN18_30_10_14_R1_B_scaffold_1796_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12861..14885)
DNA (2025bp) protein (675aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP82_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68063.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15006..15341
DNA (336bp) protein (112aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP81_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68062.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15423..15641)
DNA (219bp) protein (73aa)
Circumsporozoite protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HLS9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL47067.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
circumsporozoite protein
SCN18_30_10_14_R1_B_scaffold_1796_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15806..16792
DNA (987bp) protein (329aa)
Putative ArsR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP79_9SPHN
putative ArsR family transcriptional regulator
Putative ArsR family transcriptional regulator {ECO:0000313|EMBL:BAK68060.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1796_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17153..17260)
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INS9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68058.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 20 items

View Taxonomy