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SCN18_30_10_14_R1_B_scaffold_1878

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1878_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26..1729)
DNA (1704bp) protein (568aa)
30S ribosomal protein S1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH1_9SPHN
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1878_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1909..2262)
DNA (354bp) protein (118aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cytidylate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH2_9SPHN
cmk; cytidylate kinase
SCN18_30_10_14_R1_B_scaffold_1878_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2523..2771)
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYV4_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG48346.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCN18_30_10_14_R1_B_scaffold_1878_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2768..4108)
DNA (1341bp) protein (447aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH4_9SPHN
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase
SCN18_30_10_14_R1_B_scaffold_1878_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4282..4614
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66336.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1878_trna_1
unknown

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4737..4809
DNA (73bp)
transferRNA Ala
SCN18_30_10_14_R1_B_scaffold_1878_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5319..6731
DNA (1413bp) protein (471aa)
Type IV secretory pathway, VirJ component n=1 Tax=Sphingobium sp. AP49 RepID=J2WCI4_9SPHN
Type IV secretory pathway, VirJ component {ECO:0000313|EMBL:EJK80345.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
virulence factor family protein
SCN18_30_10_14_R1_B_scaffold_1878_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6745..9273)
DNA (2529bp) protein (843aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037476C8
Uncharacterized protein {ECO:0000313|EMBL:EQA97617.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1878_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9329..9733)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GAF2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97616.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1878_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9723..10460)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CWS2_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU76398.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
Type IV secretory pathway VirJ component-like protein
SCN18_30_10_14_R1_B_scaffold_1878_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10672..10875)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W133_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_30_10_14_R1_B_scaffold_1878_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11005..13698)
DNA (2694bp) protein (898aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA gyrase subunit A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI1_9SPHN
gyrA; DNA gyrase subunit A
SCN18_30_10_14_R1_B_scaffold_1878_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14028..15326
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66343.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1878_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15786..16259)
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI4_9SPHN
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:BAK66344.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1878_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16388..16477)
DNA (90bp) protein (30aa)
Displaying 15 items

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