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SCN18_30_10_14_R1_B_scaffold_1970

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1970_1
unknown

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1970_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

266..2857
DNA (2592bp) protein (864aa)
UPI0003D6586E related cluster n=1 Tax=unknown RepID=UPI0003D6586E
Uncharacterized protein {ECO:0000313|EMBL:AHE52126.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
magnesium-translocating P-type ATPase
SCN18_30_10_14_R1_B_scaffold_1970_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2907..3563)
DNA (657bp) protein (219aa)
OsmY domain-containing protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A1E89C
Scaffold32, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30182.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3751..4788)
DNA (1038bp) protein (346aa)
zinc-dependent alcohol dehydrogenase (EC:1.1.1.-)
Putative zinc-dependent alcohol dehydrogenase (Oxidoreductase) L-iditol 2-dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0Q9_9BRAD
Alcohol dehydrogenase {ECO:0000313|EMBL:AHE53604.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCN18_30_10_14_R1_B_scaffold_1970_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4962..5306
DNA (345bp) protein (115aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3X119_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS69504.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_6
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5394..5978
DNA (585bp) protein (195aa)
UPI0003CF139A related cluster n=1 Tax=unknown RepID=UPI0003CF139A
HdeD protein {ECO:0000313|EMBL:ESY85641.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_7
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6187..6663
DNA (477bp) protein (159aa)
Heat shock protein Hsp20 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SN51_9SPHN
Scaffold32, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30179.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
heat shock protein Hsp20
SCN18_30_10_14_R1_B_scaffold_1970_8
unknown

Not on your lists

comp(6712..7005)
DNA (294bp) protein (98aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1970_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7733..8350
DNA (618bp) protein (206aa)
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IP47_9SPHN
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCN18_30_10_14_R1_B_scaffold_1970_10
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(8554..9384)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Cronobacter malonaticus 507 RepID=K8BY09_9ENTR
Tax=RBG_16_Elusimicrobia_66_12_curated
SCN18_30_10_14_R1_B_scaffold_1970_11
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9386..10828
DNA (1443bp) protein (481aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
pyruvate, water dikinase (EC:2.7.9.2)
phosphoenolpyruvate synthase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039FF8B6
SCN18_30_10_14_R1_B_scaffold_1970_12
unknown

Not on your lists

comp(10838..10966)
DNA (129bp) protein (43aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1970_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11225..11878
DNA (654bp) protein (218aa)
OsmY domain-containing protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A1E89C
Uncharacterized protein {ECO:0000313|EMBL:AHE53579.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
transport-associated protein
SCN18_30_10_14_R1_B_scaffold_1970_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11921..12718)
DNA (798bp) protein (266aa)
universal stress protein UspA n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A3FAFF
Uncharacterized protein {ECO:0000313|EMBL:EQB02190.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
UspA domain-containing protein
SCN18_30_10_14_R1_B_scaffold_1970_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12881..13306)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XAB1_RHIFR
Inosine-5-monophosphate dehydrogenase {ECO:0000313|EMBL:KDP72751.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_16
unknown

Not on your lists

13474..13716
DNA (243bp) protein (81aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_1970_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13706..15037
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GEG7_9SPHN
Carboxylic ester hydrolase {ECO:0000313|EMBL:EXS68965.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
erythromycin esterase
SCN18_30_10_14_R1_B_scaffold_1970_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15040..15690
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00036A3F85
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:EXS68964.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_19
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15690..16382
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HX66_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02149.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Phosphoribosyltransferase
SCN18_30_10_14_R1_B_scaffold_1970_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16424..16867)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST5_9SPHN
Attachment protein {ECO:0000313|EMBL:AKH42118.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17356..18072
DNA (717bp) protein (239aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M119_METRJ
Crp/Fnr family transcription regulator {ECO:0000313|EMBL:KGB58532.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_22
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18097..19362
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I4D9_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R1_B_scaffold_1970_23
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19390..19995)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GX31_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB58530.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1970_24
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20007..20741)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GUX1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA10100.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_30_10_14_R1_B_scaffold_1970_25
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20752..21156)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GKZ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB53139.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
Putative secreted protein
SCN18_30_10_14_R1_B_scaffold_1970_26
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21225..21773)
DNA (549bp) protein (183aa)
Putative secreted protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_30_10_14_R1_B_scaffold_1970_27
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22173..23288
DNA (1116bp) protein (372aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
two-protein, nitrogen fixation sensor protein fixL n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA14A
PAS/PAC sensor signal transduction histidine kinase
SCN18_30_10_14_R1_B_scaffold_1970_28
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23278..23889
DNA (612bp) protein (204aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A10BA
Uncharacterized protein {ECO:0000313|EMBL:AHE55818.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
NarL family two-component system response regulator
SCN18_30_10_14_R1_B_scaffold_1970_29
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24379..25116
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036D26A8
PAS domain S-box {ECO:0000313|EMBL:EPY00320.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
multi-sensor signal transduction histidine kinase
Displaying 29 items

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