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SCN18_30_10_14_R1_B_scaffold_3286

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3286_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1429)
DNA (1428bp) protein (476aa)
MatE family transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN8_9SPHN
MatE family transporter
MatE family transporter {ECO:0000313|EMBL:BAK67827.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3286_2
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1445..4162)
DNA (2718bp) protein (906aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Valine--tRNA ligase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMW4_9SPHN
SCN18_30_10_14_R1_B_scaffold_3286_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4327..4899)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67825.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3286_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4914..6362)
DNA (1449bp) protein (483aa)
TolC-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN5_9SPHN
TolC-like protein
TolC-like protein {ECO:0000313|EMBL:BAK67824.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3286_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6382..7035)
DNA (654bp) protein (218aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:BAK67823.1}; EC=2.1.1.77 {ECO:0000313|EMBL:BAK67823.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN4_9SPHN
protein-L-isoaspartate O-methyltransferase
SCN18_30_10_14_R1_B_scaffold_3286_trna_1
unknown

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7224..7294
DNA (71bp)
transferRNA Cys
SCN18_30_10_14_R1_B_scaffold_3286_6
unknown

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7725..8255
DNA (531bp) protein (177aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3286_7
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8200..8496
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AY85_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL68229.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCN18_30_10_14_R1_B_scaffold_3286_8
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8567..8887
DNA (321bp) protein (107aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L1N0_9SPHN
RHS repeat-associated core domain-containing protein {ECO:0000313|EMBL:EJK81251.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
RHS repeat-associated core domain-containing protein
Displaying 9 items

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