ggKbase home page

SCN18_30_10_14_R1_B_scaffold_3641

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3641_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..223
DNA (222bp) protein (74aa)
Hydrolase (EC:3.-.-.-)
Arylesterase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HBP8_9SPHN
Arylesterase {ECO:0000313|EMBL:EZP71616.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_3641_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

294..1220
DNA (927bp) protein (309aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILF4_9SPHN
ribF; riboflavin kinase/FMN adenylyltransferase
SCN18_30_10_14_R1_B_scaffold_3641_3
SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_363, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1341..1901
DNA (561bp) protein (187aa)
Putative acetyltransferase {ECO:0000313|EMBL:BAK65218.1}; EC=2.3.1.- {ECO:0000313|EMBL:BAK65218.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILF5_9SPHN
putative acetyltransferase
SCN18_30_10_14_R1_B_scaffold_3641_4
unknown

Not on your lists

comp(1934..2263)
DNA (330bp) protein (110aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3641_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2524..5493
DNA (2970bp) protein (990aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRC6_9SPHN
SCN18_30_10_14_R1_B_scaffold_3641_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5490..6002
DNA (513bp) protein (171aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Lipoprotein signal peptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG2_9SPHN
lspA; lipoprotein signal peptidase
SCN18_30_10_14_R1_B_scaffold_3641_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6078..6410
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65226.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_8
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6485..6961
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65227.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6992..7789)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65228.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_10
unknown

Not on your lists

comp(7808..7957)
DNA (150bp) protein (50aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3641_11
unknown

Not on your lists

comp(7960..8586)
DNA (627bp) protein (209aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3641_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8617..10545)
DNA (1929bp) protein (643aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG6_9SPHN
dxs; 1-deoxy-D-xylulose-5-phosphate synthase
SCN18_30_10_14_R1_B_scaffold_3641_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10640..11026
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65230.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_14
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11031..11351
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71686.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_30_10_14_R1_B_scaffold_3641_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11459..11932)
DNA (474bp) protein (158aa)
Fur family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILG9_9SPHN
Fur family transcriptional regulator
Fur family transcriptional regulator {ECO:0000313|EMBL:BAK65232.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_16
SCNpilot_P_inoc_Microbacterium_67_17, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

12029..12862
DNA (834bp) protein (278aa)
acetoin dehydrogenase n=1 Tax=Mycobacterium abscessus RepID=UPI000311DDE6
Short-chain dehydrogenase {ECO:0000313|EMBL:KDA05327.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
short chain dehydrogenase
SCN18_30_10_14_R1_B_scaffold_3641_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12859..14019
DNA (1161bp) protein (387aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas putida (strain KT2440) RepID=Q88LI2_PSEPK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN67566.1}; TaxID=160488 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain KT2440).;"
SCN18_30_10_14_R1_B_scaffold_3641_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14037..14996)
DNA (960bp) protein (320aa)
C4-dicarboxylate transport protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH1_9SPHN
dctA; C4-dicarboxylate transport protein
C4-dicarboxylate transport protein {ECO:0000313|EMBL:BAK65234.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_19
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14993..15292)
DNA (300bp) protein (100aa)
C4-dicarboxylate transport protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH1_9SPHN
dctA; C4-dicarboxylate transport protein
C4-dicarboxylate transport protein {ECO:0000313|EMBL:BAK65234.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3641_20
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15476..17200
DNA (1725bp) protein (575aa)
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65235.1}; EC=1.3.99.- {ECO:0000313|EMBL:BAK65235.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acyl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH2_9SPHN
putative acyl-CoA dehydrogenase
SCN18_30_10_14_R1_B_scaffold_3641_21
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17568..20726
DNA (3159bp) protein (1053aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH3_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65236.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
TonB-dependent receptor-like protein
SCN18_30_10_14_R1_B_scaffold_3641_22
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20861..21181
DNA (321bp) protein (107aa)
Quinohemoprotein alcohol dehydrogenase {ECO:0000313|EMBL:BAK65237.1}; EC=1.1.99.- {ECO:0000313|EMBL:BAK65237.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Quinohemoprotein alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH4_9SPHN
quinohemoprotein alcohol dehydrogenase
Displaying 22 items

View Taxonomy