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SCN18_30_10_14_R1_B_scaffold_3734

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3734_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..721
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBL5_NOVAD
conjugal transfer protein TrbG/VirB9/CagX
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ABD24758.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_3734_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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718..1914
DNA (1197bp) protein (399aa)
Conjugation TrbI-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBL6_NOVAD
conjugation TrbI-like protein
Conjugation TrbI-like protein {ECO:0000313|EMBL:ABD24757.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_3734_3
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1911..2135
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBL7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24756.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_3734_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2123..3019)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBL8_NOVAD
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD24755.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_3734_5
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3280..4521)
DNA (1242bp) protein (414aa)
Phage integrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBL9_NOVAD
phage integrase
Phage integrase {ECO:0000313|EMBL:ABD24754.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_3734_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4651..5346)
DNA (696bp) protein (232aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INM2_9SPHN
trmB; tRNA (guanine-N(7)-)-methyltransferase
SCN18_30_10_14_R1_B_scaffold_3734_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5425..6537)
DNA (1113bp) protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA polymerase III subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INQ3_9SPHN
dnaN; DNA polymerase III subunit beta
SCN18_30_10_14_R1_B_scaffold_3734_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6718..7221
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INQ2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68031.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3734_9
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7232..7777
DNA (546bp) protein (182aa)
Putative aspartate racemase n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZTZ7_PSEAC
Putative aspartate racemase {ECO:0000313|EMBL:GAD64557.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
aspartate racemase
Displaying 9 items

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