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SCN18_30_10_14_R1_B_scaffold_3881

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3881_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..142)
DNA (141bp) protein (47aa)
Putative succinate-semialdehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQT3_9SPHN
putative succinate-semialdehyde dehydrogenase
Putative vanillin dehydrogenase {ECO:0000313|EMBL:BAC56974.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_3881_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(249..1673)
DNA (1425bp) protein (475aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQT2_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK65954.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3881_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1882..2400
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQT1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65953.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3881_4
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2452..3270
DNA (819bp) protein (273aa)
Putative oxidoreductase SadH {ECO:0000313|EMBL:AKH43825.1}; EC=1.-.-.- {ECO:0000313|EMBL:AKH43825.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EDD1A1
short-chain dehydrogenase/reductase SDR
SCN18_30_10_14_R1_B_scaffold_3881_5
unknown

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comp(3423..3614)
DNA (192bp) protein (64aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_3881_6
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3788..5464)
DNA (1677bp) protein (559aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Formate--tetrahydrofolate ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQS9_9SPHN
ligH; 10-formyltetrahydrofolate synthetase
SCN18_30_10_14_R1_B_scaffold_3881_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5556..6422)
DNA (867bp) protein (289aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Methylenetetrahydrofolate reductase n=2 Tax=Sphingomonadaceae RepID=G2IQS8_9SPHN
metF; 5,10-methylenetetrahydrofolate reductase
SCN18_30_10_14_R1_B_scaffold_3881_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6570..7985)
DNA (1416bp) protein (472aa)
Vanillate/3-O-methylgallate O-demethylase n=1 Tax=Sphingomonas paucimobilis RepID=Q60FX1_SPHPI
ligM; vanillate/3-O-methylgallate O-demethylase
Vanillate/3-O-methylgallate O-demethylase {ECO:0000313|EMBL:BAD61059.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_3881_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8241..8789)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQS6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65948.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3881_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8786..9520)
DNA (735bp) protein (245aa)
Putative esterase n=2 Tax=Sphingomonadaceae RepID=G2IQS5_9SPHN
putative esterase
Putative esterase {ECO:0000313|EMBL:BAK65947.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3881_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9534..10391)
DNA (858bp) protein (286aa)
Putative oxidoreductase n=2 Tax=Sphingomonadaceae RepID=G2IQS4_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65946.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 11 items

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