ggKbase home page

SCN18_30_10_14_R1_B_scaffold_3908

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_3908_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91..1350
DNA (1260bp) protein (420aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT9_9SPHN
fabF; 3-oxoacyl-ACP synthase
SCN18_30_10_14_R1_B_scaffold_3908_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1358..2329
DNA (972bp) protein (324aa)
Putative aminodeoxychorismate lyase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT8_9SPHN
putative aminodeoxychorismate lyase
Putative aminodeoxychorismate lyase {ECO:0000313|EMBL:BAK66798.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2336..2767)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66797.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2839..3351
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66796.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3367..4599)
DNA (1233bp) protein (411aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT5_9SPHN
FAD-dependent oxidoreductase
FAD-dependent oxidoreductase {ECO:0000313|EMBL:BAK66795.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_trna_2
unknown

Not on your lists

comp(4692..4765)
DNA (74bp)
transferRNA Met
SCN18_30_10_14_R1_B_scaffold_3908_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4852..6225)
DNA (1374bp) protein (458aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS75_9SPHN
putative aromatic acid transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK66235.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6386..7597
DNA (1212bp) protein (404aa)
Putative dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK65_9SPHN
putative dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:BAK67423.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7852..8886
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS77_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66237.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9068..9280
DNA (213bp) protein (71aa)
SCN18_30_10_14_R1_B_scaffold_3908_trna_1
unknown

Not on your lists

comp(9307..9393)
DNA (87bp)
transferRNA Ser
SCN18_30_10_14_R1_B_scaffold_3908_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9628..10596
DNA (969bp) protein (323aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ2_9SPHN
membrane-bound lytic murein transglycosylase B
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:BAK66702.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10580..11119
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66701.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_3908_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11132..11806
DNA (675bp) protein (225aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:BAK66700.1}; EC=3.4.16.4 {ECO:0000313|EMBL:BAK66700.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ0_9SPHN
dac; D-alanyl-D-alanine carboxypeptidase
SCN18_30_10_14_R1_B_scaffold_3908_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11788..12189
DNA (402bp) protein (134aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:BAK66700.1}; EC=3.4.16.4 {ECO:0000313|EMBL:BAK66700.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITJ0_9SPHN
dac; D-alanyl-D-alanine carboxypeptidase
SCN18_30_10_14_R1_B_scaffold_3908_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12312..12953
DNA (642bp) protein (214aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Thymidylate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI9_9SPHN
tmk; thymidylate kinase
SCN18_30_10_14_R1_B_scaffold_3908_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12950..13936
DNA (987bp) protein (329aa)
DNA polymerase III delta' subunit {ECO:0000313|EMBL:BAK66698.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK66698.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA polymerase III delta' subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI8_9SPHN
holB; DNA polymerase III subunit delta'
Displaying 17 items

View Taxonomy