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SCN18_26_2_15_R5_B_scaffold_1074

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R5_B_scaffold_1074_1
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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126..1508
DNA (1383bp) protein (461aa)
Inner membrane protein n=1 Tax=Pseudomonas sp. UW4 RepID=K9NSF6_9PSED
Strain UM270 sctg_0067_0001, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ59600.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
creD; inner membrane protein
SCN18_26_2_15_R5_B_scaffold_1074_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1603..2712
DNA (1110bp) protein (370aa)
Putrescine-binding periplasmic protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH91_TISMK
potF; PotF
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_3
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2714..3721
DNA (1008bp) protein (336aa)
Spermidine/putrescine ABC transporter, ATP-binding protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8J0_PHEZH
potG; spermidine/putrescine ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3925..4764
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000360D589
binding-protein dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_5
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4775..5566
DNA (792bp) protein (264aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E3D9_9GAMM
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EGZ48681.1}; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
spermidine/putrescine ABC transporter permease II
SCN18_26_2_15_R5_B_scaffold_1074_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5596..6843
DNA (1248bp) protein (416aa)
sulfite oxidase (EC:1.8.3.1)
Sulfite oxidase n=2 Tax=Oligotropha carboxidovorans RepID=B6JFX8_OLICO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6855..7274
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGB0_NITHX
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_8
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7338..7649)
DNA (312bp) protein (104aa)
Transcriptional regulator, HxlR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVT0_PARL1
HxlR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7734..8276
DNA (543bp) protein (181aa)
Carboxymuconolactone decarboxylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVT1_PARL1
carboxymuconolactone decarboxylase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_1074_10
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8286..9188)
DNA (903bp) protein (301aa)
Polysaccharide deacetylase family protein 2 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQV4_ACHXA
polysaccharide deacetylase
Polysaccharide deacetylase family protein 2 {ECO:0000313|EMBL:ADP14762.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCN18_26_2_15_R5_B_scaffold_1074_11
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9207..10421)
DNA (1215bp) protein (405aa)
ABC transporter permease n=1 Tax=Roseomonas sp. B5 RepID=UPI00030156C0
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHL98184.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative substrate-binding protein
SCN18_26_2_15_R5_B_scaffold_1074_12
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10449..11216)
DNA (768bp) protein (256aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EPX85110.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EPX85110.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S4L6_9RHOB
short-chain dehydrogenase/reductase SDR
SCN18_26_2_15_R5_B_scaffold_1074_13
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11305..11913
DNA (609bp) protein (203aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U041_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KIZ33038.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator
SCN18_26_2_15_R5_B_scaffold_1074_14
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11951..12775)
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-O19 RepID=UPI000376CD6E
Phytanoyl-CoA dioxygenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 14 items

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