ggKbase home page

SCN18_26_2_15_R5_B_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R5_B_scaffold_258_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..472)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMU5_METSB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_2
SCNPILOT_EXPT_750_P_Thiobacillus_65_1100, SCNPILOT_EXPT_750_P_Thiobacillus_65_1100, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(488..2302)
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6V6_STAND
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2454..3179
DNA (726bp) protein (242aa)
Heat shock protein DnaJ domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6V7_STAND
heat shock protein DnaJ domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_4
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3189..3497)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZD96_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB82345.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCN18_26_2_15_R5_B_scaffold_258_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3711..4121
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036AFCCF
adenosine 5'-monophosphoramidase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_6
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

4118..5008
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Nocardiopsis valliformis RepID=UPI00036AE809
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_7
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5085..5951
DNA (867bp) protein (289aa)
Putative TauD/TfdA family dioxygenase {ECO:0000313|EMBL:CCE05998.1}; EC=1.14.11.17 {ECO:0000313|EMBL:CCE05998.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative TauD/TfdA family dioxygenase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THR0_9BRAD
TauD/TfdA family dioxygenase
SCN18_26_2_15_R5_B_scaffold_258_8
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5977..6645
DNA (669bp) protein (223aa)
Putative Homoserine/threonine efflux protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHK0_9RHIZ
Putative Homoserine/threonine efflux protein {ECO:0000313|EMBL:CCV03618.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
LysE family efflux protein
SCN18_26_2_15_R5_B_scaffold_258_9
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6663..7946)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D42_POLSJ
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:KJK24373.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
SCN18_26_2_15_R5_B_scaffold_258_10
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7959..8816)
DNA (858bp) protein (286aa)
Creatininase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D43_POLSJ
Creatininase {ECO:0000313|EMBL:KJK24372.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
creatininase
SCN18_26_2_15_R5_B_scaffold_258_11
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9022..10089
DNA (1068bp) protein (356aa)
AraC family transcriptional regulator n=1 Tax=Pseudomonas psychrophila RepID=UPI0002E1C7C4
AraC family transcriptional regulator {ECO:0000313|EMBL:KJZ63190.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
AraC family transcriptional regulator
SCN18_26_2_15_R5_B_scaffold_258_12
scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, Mobile_element

Not on your lists

comp(10120..12585)
DNA (2466bp) protein (822aa)
TonB-dependent siderophore receptor n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU64_METTR
Probable tonB-dependent receptor protein {ECO:0000313|EMBL:EAQ36109.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent siderophore receptor
SCN18_26_2_15_R5_B_scaffold_258_13
scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, Mobile_element

Not on your lists

comp(12735..13778)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H2N9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV31852.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
two component sensor histidine kinase FecR/PupR
SCN18_26_2_15_R5_B_scaffold_258_14
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13882..14382)
DNA (501bp) protein (167aa)
Sigma-24 FecI protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HNE4_9PROT
Sigma-24 FecI protein {ECO:0000313|EMBL:EKV31853.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
sigma-24 (FecI)
SCN18_26_2_15_R5_B_scaffold_258_15
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14632..16272
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=I6AJW5_BURTH
AMP-binding enzyme family protein
AMP-binding enzyme family protein {ECO:0000313|EMBL:AJY41017.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
SCN18_26_2_15_R5_B_scaffold_258_16
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16549..17700
DNA (1152bp) protein (384aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AD57_PSERE
SCN18_26_2_15_R5_B_scaffold_258_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19120..20796)
DNA (1677bp) protein (559aa)
Mg chelatase related protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVJ9_RHOCS
Mg chelatase related protein
Mg chelatase related protein {ECO:0000313|EMBL:ACJ00323.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_26_2_15_R5_B_scaffold_258_18
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21029..22036)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCG6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ELX09334.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
beta and gamma crystallin
SCN18_26_2_15_R5_B_scaffold_258_19
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22372..23568
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QZ17_RALPI
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KIZ44024.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acyl-CoA dehydrogenase
SCN18_26_2_15_R5_B_scaffold_258_20
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(23748..24788)
DNA (1041bp) protein (347aa)
dppF3; ABC transporter ATPase (EC:3.6.3.23)
ABC transporter ATPase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XID0_9RALS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24781..25764)
DNA (984bp) protein (328aa)
Peptide ABC transporter ATP-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2G4Z0_9BURK
Oligopeptide transport system permease protein OppB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_22
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25796..27511)
DNA (1716bp) protein (572aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GBR1_9BURK
dppA; peptide ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_23
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27669..29384)
DNA (1716bp) protein (572aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GBR1_9BURK
dppA; peptide ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_24
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29414..30313)
DNA (900bp) protein (300aa)
ABC transporter permease n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GDY5_9BURK
Dipeptide transport system permease protein DppC
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_25
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30313..31269)
DNA (957bp) protein (319aa)
ABC transporter permease n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S7D4_9BURK
Putative glutathione transporter, permease component
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_26
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31269..33104)
DNA (1836bp) protein (612aa)
acyl-CoA synthetase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B16E7
Acyl-CoA synthetase {ECO:0000313|EMBL:GAK46101.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-CoA synthetase
SCN18_26_2_15_R5_B_scaffold_258_27
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33215..34384)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELD7_METSB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_28
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34445..35656
DNA (1212bp) protein (404aa)
CAIB/BAIF family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W8K7_9CAUL
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_258_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35689..36504)
DNA (816bp) protein (272aa)
ABC transporter n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003704C3E
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000313|EMBL:CEJ13603.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter
SCN18_26_2_15_R5_B_scaffold_258_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36492..37301)
DNA (810bp) protein (270aa)
Alkanesulfonates transport system permease protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UGK0_9RHOB
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:KFC72843.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter inner membrane protein
Displaying items 1-30 of 60 in total

View Taxonomy