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SCN18_31_3_15_R1_B_scaffold_1039

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R1_B_scaffold_1039_1
unknown

Not on your lists

comp(1..72)
DNA (72bp) protein (24aa)

This feature has no annotations

SCN18_31_3_15_R1_B_scaffold_1039_2
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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201..773
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas spongiae UST010723-006 RepID=U1KL47_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERG51755.1}; TaxID=1117319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas spongiae UST010723-006.;"
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
SCN18_31_3_15_R1_B_scaffold_1039_3
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(943..1509)
DNA (567bp) protein (189aa)
Cytochrome c, class I n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA5_NITHX
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ABE61942.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_4
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1496..3118)
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGF4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29577.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
twin-arginine translocation pathway signal
SCN18_31_3_15_R1_B_scaffold_1039_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3243..3746
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61939.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3787..5337)
DNA (1551bp) protein (517aa)
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Homodimeric glycerol 3-phosphate dehydrogenase (Quinone) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA9_NITHX
SCN18_31_3_15_R1_B_scaffold_1039_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5914..6348)
DNA (435bp) protein (145aa)
Thioesterase superfamily n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB1_NITHX
thioesterase superfamily protein
Thioesterase superfamily {ECO:0000313|EMBL:ABE61936.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6548..8638)
DNA (2091bp) protein (697aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABE61935.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABE61935.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB2_NITHX
3-hydroxyacyl-CoA dehydrogenase
SCN18_31_3_15_R1_B_scaffold_1039_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8854..10137)
DNA (1284bp) protein (428aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA C-acyltransferase {ECO:0000313|EMBL:ABE61934.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ABE61934.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Acetyl-CoA C-acyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB3_NITHX
SCN18_31_3_15_R1_B_scaffold_1039_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10137..12401)
DNA (2265bp) protein (755aa)
fadE; acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB4_NITHX
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ABE61933.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13244..15340
DNA (2097bp) protein (699aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB9_NITHX
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ABE61928.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
methyl-accepting chemotaxis sensory transducer
SCN18_31_3_15_R1_B_scaffold_1039_12
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15644..15859
DNA (216bp) protein (72aa)
CsbD-like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW23_9BRAD
hypothetical protein
CsbD-like protein {ECO:0000313|EMBL:EAQ35817.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_31_3_15_R1_B_scaffold_1039_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15984..16751
DNA (768bp) protein (256aa)
UPF0176 protein Nham_1078 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y1078_NITHX
rhodanese-like protein
UPF0176 protein Nham_1078 {ECO:0000255|HAMAP-Rule:MF_00469}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16744..16956
DNA (213bp) protein (71aa)
Protein SlyX homolog n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=SLYX_NITHX
SlyX family protein
Protein SlyX homolog {ECO:0000255|HAMAP-Rule:MF_00715}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17089..18405
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61924.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18449..19435)
DNA (987bp) protein (329aa)
2-nitropropane dioxygenase {ECO:0000313|EMBL:ABE61923.1}; EC=1.13.12.16 {ECO:0000313|EMBL:ABE61923.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
2-nitropropane dioxygenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC4_NITHX
2-nitropropane dioxygenase
SCN18_31_3_15_R1_B_scaffold_1039_17
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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19732..20403
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61922.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20618..20905
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW30_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35810.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_1039_19
scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, Eukaryote

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21854..25114
DNA (3261bp) protein (1087aa)
Tetratricopeptide TPR_2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC7_NITHX
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:ABE61920.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_1039_20
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25352..25603
DNA (252bp) protein (84aa)
Formate/nitrite transporter n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW31_9BRAD
Formate/nitrite transporter {ECO:0000313|EMBL:EAQ35807.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
formate/nitrite transporter
SCN18_31_3_15_R1_B_scaffold_1039_21
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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25680..26039
DNA (360bp) protein (120aa)
Formate/nitrite transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC8_NITHX
formate/nitrite transporter
Formate/nitrite transporter {ECO:0000313|EMBL:ABE61919.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26684..27109)
DNA (426bp) protein (142aa)
Transcriptional regulator, PadR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC9_NITHX
PadR-like family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABE61918.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_23
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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28106..28840
DNA (735bp) protein (245aa)
HAD-superfamily hydrolase subfamily IA, variant 3 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD2_NITHX
HAD family hydrolase
HAD-superfamily hydrolase subfamily IA, variant 3 {ECO:0000313|EMBL:ABE61915.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_24
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29004..30356)
DNA (1353bp) protein (451aa)
Glycosyl transferase, group 1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD3_NITHX
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABE61914.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30624..30866
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61913.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31128..32015
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61912.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_1039_27
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32105..34558
DNA (2454bp) protein (818aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD6_NITHX
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE61911.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
glycosyl transferase family protein
SCN18_31_3_15_R1_B_scaffold_1039_28
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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34555..36906
DNA (2352bp) protein (784aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD7_NITHX
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE61910.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
glycosyl transferase family protein
SCN18_31_3_15_R1_B_scaffold_1039_29
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(37097..37210)
DNA (114bp) protein (38aa)
hypothetical protein, partial n=1 Tax=alpha proteobacterium L41A RepID=UPI0003683CD7
Uncharacterized protein {ECO:0000313|EMBL:KJC50914.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
transposase
Displaying 29 items

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